View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2335_low_8 (Length: 464)
Name: NF2335_low_8
Description: NF2335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2335_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 238 - 455
Target Start/End: Original strand, 40025284 - 40025501
Alignment:
| Q |
238 |
ttagttaccccttgattttcgatgcctctagattcttcaatcatgtcttgctcattgacactattgctttcagaatcatgaacatttgaagattgttgaa |
337 |
Q |
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| T |
40025284 |
ttagttaccccttgattttcgatgcctctagattcttcaatcatgtcttgctcattgacactattgctttcagaatcatgaacatttgaagattgttgaa |
40025383 |
T |
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| Q |
338 |
gtgactccttagcacttttataggatgatgattcttgaacatctaactgttcctcaactttctcatgtgtagatgtcaccaatgactcctcaactccctt |
437 |
Q |
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| T |
40025384 |
gtgactccttagcacttttataggatgatgattcttgaacatctaactgttcctcaactttctcatgtgtagatgtcaccaatgactcctcaattccctt |
40025483 |
T |
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| Q |
438 |
tggaggaacaacctttgc |
455 |
Q |
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| T |
40025484 |
tggaggaacaacctttgc |
40025501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 40025065 - 40025211
Alignment:
| Q |
19 |
catgcctcagaatttcaaagagtccacaacaattcttccaagaggtgtgttgcctttgagtcacagcaaaaatgctctgtcacaaaataaagaagaagga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40025065 |
catgcctcagaatttcaaagagtccacaacaattcttccaagaggtgtgttgcctttgagtcacagcaaaaatgctctgtcacaaaagaaagaagaagga |
40025164 |
T |
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| Q |
119 |
ccaatatatatcttaaaactttatgacagttaacacttactaagcac |
165 |
Q |
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| T |
40025165 |
ccaatatatatcttaaaactttatgacagttaacacttactaagcac |
40025211 |
T |
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