View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_high_1 (Length: 694)
Name: NF2336_high_1
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 624; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 10 - 678
Target Start/End: Original strand, 2344686 - 2345358
Alignment:
| Q |
10 |
attattctgtataggctggttggtgttggagaggcttcgtttataagtctagcagcaccttttattgatgacaatgccccagcttctcaggtctgcttct |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2344686 |
attattctgtataggctggttggtgttggagaggcttcgtttataagtctagcagcaccttttattgatgacaatgccccagcttctcaggtctgcttct |
2344785 |
T |
|
| Q |
110 |
ttcccatgtagatttatttatataattagagtcaaaaatctaatcaagcttaggtagagtgatcatat----aactgaaatgaaataatatattattagt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2344786 |
ttcccatgtagatttatttatataattagagtcaaaaatctaatcaagcttaggtagagtgatcatatatataactgaaatgaaataatatattattagt |
2344885 |
T |
|
| Q |
206 |
actgtgtaatattcaaaccgacgtaaagaatattactaataaccaattgattagcatgaaatgtgccaagtttgattcatttcaacatatcaatgtcatt |
305 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2344886 |
actgtgtaataatcaaaccgacgtaaagaatattactaatagccaattgattagcatgaaatgtgccaagtttgattcatttcaacatatcaatgtcatt |
2344985 |
T |
|
| Q |
306 |
tgtcaataactgctcgctgttcttatttatttctggtggacatctttatctcatactccttgctgtatctgaaaacagcatagcttgcaatgttttacat |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
2344986 |
tgtcaataactgctcgctgttcttatttatttctggtggacatcttaatctcatactccttgttgtatcagaaaacagcatagcttgcaatgttttacat |
2345085 |
T |
|
| Q |
406 |
gtgtataccatccggatatgcatttggatatgtctatggtggtttggtaagtctttatctggctcccatatcactattgaaatctaaataatcaatttga |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2345086 |
gtgtataccatccggatatgcatttggatatgtctatggtggtttggtaagtctttatctggctcccatatcactattgaaatctaaataatcaatttga |
2345185 |
T |
|
| Q |
506 |
gttgtttacttcttttttgaaataaataaattgacctttctgatgtatcctttgtgttcaataacaggttggaagtcattttggttggcgttatgcattc |
605 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2345186 |
gttgtttacttcttttctgaaataaataaattgacctttctgatgtatcctttgtgttcaataacaggttggaagtcattttggttggcgttatgcattc |
2345285 |
T |
|
| Q |
606 |
tgggtcgagtctattttgatgcttccatttgctattttaggatttgcaatgaagcctttacagttgaaaggta |
678 |
Q |
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||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2345286 |
tggatcgagtctattttgatgcttccattttctattttaggatttgcaatgaagcctttacagttgaaaggta |
2345358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 554 - 678
Target Start/End: Original strand, 2338270 - 2338394
Alignment:
| Q |
554 |
cctttgtgttcaataacaggttggaagtcattttggttggcgttatgcattctgggtcgagtctattttgatgcttccatttgctattttaggatttgca |
653 |
Q |
| |
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|||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||| | |
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| T |
2338270 |
cctttgtgtttattaacagattggaagtcattttggttggcgttatgcattctgggtagagtctatattgatgcttccatttgctatttcaggattttta |
2338369 |
T |
|
| Q |
654 |
atgaagcctttacagttgaaaggta |
678 |
Q |
| |
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|||||||||||||| |||||||||| |
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| T |
2338370 |
atgaagcctttacacttgaaaggta |
2338394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 284 - 467
Target Start/End: Original strand, 2337985 - 2338171
Alignment:
| Q |
284 |
atttcaacatatcaatgtcatttgtcaataactgctcgctgttcttatttatttctggtggacatctttatctcatactcct--tgc-tgtatctgaaaa |
380 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| |||||||||| || ||| ||||||| |||| ||||||||||| | || |||| | ||||| |
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| T |
2337985 |
atttcaacattccaatgtcatttgtcaatcgttgcccgctgttctttcttctttatggtggaaatctctatctcatactaataatgtgtgtaacagaaaa |
2338084 |
T |
|
| Q |
381 |
cagcatagcttgcaatgttttacatgtgtataccatccggatatgcatttggatatgtctatggtggtttggtaagtctttatctgg |
467 |
Q |
| |
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| ||| ||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||| |
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| T |
2338085 |
cgacatggctcgcaatgttttacatgtgtataccatccggatatgcacttggctatgtctatggtggtttggtaagtctctatctgg |
2338171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 2324557 - 2324738
Alignment:
| Q |
20 |
ataggctggttggtgttggagaggcttcgtttataagtctagcagcaccttttattgatgacaatgccccagcttctcaggtctgcttctttcccatgta |
119 |
Q |
| |
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|||| |||||||||||||| ||||| |||||||||||| ||||||| ||||| ||||||||||| ||||||||| ||||||| || || |||||| |||| |
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| T |
2324557 |
atagtctggttggtgttggtgaggcatcgtttataagtttagcagcccctttcattgatgacaacgccccagctcctcaggtttgtttatttcccttgta |
2324656 |
T |
|
| Q |
120 |
gatttatttatataattagagtcaaaaatctaatcaagcttaggtagagtgatcatataactgaaatgaaataatatattatt |
202 |
Q |
| |
|
||||| || ||| ||| ||| ||||| ||||||| |||||| |||||||| | |||| ||||||||||||||||| |||| |
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|
| T |
2324657 |
gatttcttgatacaatcgtagttgaaaatataatcaaacttaggcagagtgataacataa-tgaaatgaaataatatactatt |
2324738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 2337804 - 2337891
Alignment:
| Q |
10 |
attattctgtataggctggttggtgttggagaggcttcgtttataagtctagcagcaccttttattgatgacaatgccccagcttctc |
97 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||| ||||||||||| ||||| ||||||| |
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| T |
2337804 |
attattctgtataggctggttggtgttggcgaggcttcgtttataagtttagcaccacctttcattgatgacaacgccccggcttctc |
2337891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 8e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 568 - 677
Target Start/End: Complemental strand, 36797568 - 36797459
Alignment:
| Q |
568 |
aacaggttggaagtcattttggttggcgttatgcattctgggtcgagtctattttgatgcttccatttgctattttaggatttgcaatgaagcctttaca |
667 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||| ||| || | ||||||||||||||||||||||| ||||||| ||||||||||| || |
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| T |
36797568 |
aacaggttggaagtcattttggttggcgttatgcgttttgggtggaggctgtcttgatgcttccatttgctattttgggatttgttatgaagcctttgca |
36797469 |
T |
|
| Q |
668 |
gttgaaaggt |
677 |
Q |
| |
|
||| |||||| |
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|
| T |
36797468 |
gttaaaaggt |
36797459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 36798572 - 36798469
Alignment:
| Q |
11 |
ttattctgtataggctggttggtgttggagaggcttcgtttataagtctagcagcaccttttattgatgacaatgccccagcttctcaggtctgcttctt |
110 |
Q |
| |
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||||||| | |||||| ||||||||||| |||||||| ||||||||||| ||||||||||| |||||||| || ||||||||||| ||||| || | ||| |
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| T |
36798572 |
ttattctctctaggctcgttggtgttggcgaggcttcatttataagtcttgcagcacctttcattgatgataacgccccagcttcacaggtttgttactt |
36798473 |
T |
|
| Q |
111 |
tccc |
114 |
Q |
| |
|
|||| |
|
|
| T |
36798472 |
tccc |
36798469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 369 - 457
Target Start/End: Complemental strand, 36797933 - 36797845
Alignment:
| Q |
369 |
tgtatctgaaaacagcatagcttgcaatgttttacatgtgtataccatccggatatgcatttggatatgtctatggtggtttggtaagt |
457 |
Q |
| |
|
|||||| |||||||| | |||| | || |||||||||||||||||| ||||||||| |||| ||||| |||||||| |||||||| |
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| T |
36797933 |
tgtatcagaaaacagtgtggctttctatattttacatgtgtataccagggggatatgcaattggctatgtatatggtggagtggtaagt |
36797845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 376 - 456
Target Start/End: Complemental strand, 12968136 - 12968056
Alignment:
| Q |
376 |
gaaaacagcatagcttgcaatgttttacatgtgtataccatccggatatgcatttggatatgtctatggtggtttggtaag |
456 |
Q |
| |
|
||||||||||| |||||| | |||||||||||||||||| ||||| ||| | || ||||| |||||||| |||||||| |
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| T |
12968136 |
gaaaacagcatggcttgctacattttacatgtgtataccagccggaactgctctgggctatgtttatggtggattggtaag |
12968056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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