View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_high_19 (Length: 385)
Name: NF2336_high_19
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 19 - 375
Target Start/End: Original strand, 8553960 - 8554316
Alignment:
| Q |
19 |
ttgtctattggaatctggtttgtcttatttcatttcattagcttgtgtttgattatttcatatgcaaaattatacatttcaggtttttgctcctagtaaa |
118 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8553960 |
ttgtctattggaatttggtttgtcttatttcatttcattagcttgtgtttgattatttcatatgcaaaattatacatttcaggtttttgctcctagtaaa |
8554059 |
T |
|
| Q |
119 |
gatggaaccaagatcccaatgttcattgttgcgagaaaggatattattttggatggttcacacccttgtttattatatggatatggcggttataacatta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8554060 |
gatggaaccaagatcccaatgttcattgttgcgagaaaggatattattttggatggttcacacccttgtttattatatggatatggcggttataacatta |
8554159 |
T |
|
| Q |
219 |
gtcttacaccatcttttagcgtcagccatattgtcctagcaagatatttaggttttgttttctgcatagcaaatatccgtggcggtggagaatacggaga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8554160 |
gtcttacaccatcttttagcgtcagccatattgtcctagcaagatatttaggttttgttttctgcatagcaaatatccgtggcggtggagaatacggaga |
8554259 |
T |
|
| Q |
319 |
ggaatggcataaagcagcatccctttcaaacaagcaaaattgctttgatgacttcat |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8554260 |
ggaatggcataaagcagcatccctttcaaacaagcaaaattgctttgatgacttcat |
8554316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 92 - 375
Target Start/End: Original strand, 8558508 - 8558791
Alignment:
| Q |
92 |
acatttcaggtttttgctcctagtaaagatggaaccaagatcccaatgttcattgttgcgagaaaggatattattttggatggttcacacccttgtttat |
191 |
Q |
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| T |
8558508 |
acatttcaggtttttgcgcctagtaaagatggaaccaagataccgatgttcattgtttccagaaaggatataattttgaatggttcacacccttgtttgt |
8558607 |
T |
|
| Q |
192 |
tatatggatatggcggttataacattagtcttacaccatcttttagcgtcagccatattgtcctagcaagatatttaggttttgttttctgcatagcaaa |
291 |
Q |
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||||||||||||| |||| |||| | ||||||||||||| ||| || ||||| | ||||||||| ||||| ||||||||| |||| ||||||||||||| |
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| T |
8558608 |
tatatggatatggtggttttaacgtcagtcttacaccatttttcagtgtcagtcgtattgtccttgcaaggcatttaggttctgttatctgcatagcaaa |
8558707 |
T |
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| Q |
292 |
tatccgtggcggtggagaatacggagaggaatggcataaagcagcatccctttcaaacaagcaaaattgctttgatgacttcat |
375 |
Q |
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||| ||||| |||||||||||||||||||| ||||||||||||| ||||||||| || |||||||||||||||||||||||||| |
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| T |
8558708 |
tattcgtggtggtggagaatacggagaggagtggcataaagcaggatccctttcgaaaaagcaaaattgctttgatgacttcat |
8558791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 92 - 375
Target Start/End: Original strand, 53738432 - 53738715
Alignment:
| Q |
92 |
acatttcaggtttttgctcctagtaaagatggaaccaagatcccaatgttcattgttgcgagaaaggatattattttggatggttcacacccttgtttat |
191 |
Q |
| |
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||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| | |||||||||| |||| |||||||||||||| ||| | | |
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| T |
53738432 |
acatttcaggtttttttccctagtaaagatggcaccaagatcccaatgttcattgttgcaaaaaaggatattgttttcgatggttcacacccgtgtctgt |
53738531 |
T |
|
| Q |
192 |
tatatggatatggcggttataacattagtcttacaccatcttttagcgtcagccatattgtcctagcaagatatttaggttttgttttctgcatagcaaa |
291 |
Q |
| |
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||||||||||||| |||| |||||| ||| |||||||||| || || || || | ||||| || ||| | ||||||||||||||| |||||| || || |
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| T |
53738532 |
tatatggatatggtggttttaacatcagtattacaccatccttcagtgttagtcgcattgtactcacaaaacatttaggttttgtttactgcattgcgaa |
53738631 |
T |
|
| Q |
292 |
tatccgtggcggtggagaatacggagaggaatggcataaagcagcatccctttcaaacaagcaaaattgctttgatgacttcat |
375 |
Q |
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||| ||||| ||||||||||| || || |||||||||||||||| |||||| | || || || |||||||||||||||||||| |
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| T |
53738632 |
tattcgtggtggtggagaatatggggaagaatggcataaagcaggttcccttgctaaaaaacagaattgctttgatgacttcat |
53738715 |
T |
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