View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_high_2 (Length: 644)
Name: NF2336_high_2
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 12 - 366
Target Start/End: Original strand, 8167840 - 8168194
Alignment:
| Q |
12 |
atgaatgggatgcagggtacacagtacgatttggaataatttatgtcgatttcgttaacaatttgaaaagatatcccaagtactctgctttttggctgca |
111 |
Q |
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| T |
8167840 |
atgaatgggatgcagggtacacagtacgatttggaataatttatgtcgatttcgttaacaatttgaagagatatcccaagtactctgctttttggctgca |
8167939 |
T |
|
| Q |
112 |
aaagtttcttctcaagggaaaacactaaatttgatgttcatttggcatgtctaagattttcccatgttgtttttcgaatttccaatgtcaccttagtata |
211 |
Q |
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| T |
8167940 |
aaagttccttctcaagggaaaacactaaatttgatgttcatttggcatgtctaagattttccattgttgtttgtcgaatttccaatgtcaccttagtata |
8168039 |
T |
|
| Q |
212 |
ttacttgctttcatatgtattgagataattggtgataccaattatgtaatgctgaaatgagtaagttaatatcaataaataaattgttggaacaactctc |
311 |
Q |
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| T |
8168040 |
ttacttgctttcatatgtattgagataattggtgataccaattatgtaatgctgaaatgagtaagttaatatcaataaataaattgttggaacaactctc |
8168139 |
T |
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| Q |
312 |
ttccattctctagcaactctcttttttgggaaggattgtttttagtttcacattt |
366 |
Q |
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| T |
8168140 |
ttccattctctagcaactctcttttttgtgaaggattgtttttagtttcacattt |
8168194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 364 - 625
Target Start/End: Original strand, 8168220 - 8168481
Alignment:
| Q |
364 |
tttcgttacatgagtttccgttgtttatgaacttattattttaattgctattcattgaattttagatctctcctacttttattgagtgaatgatcatttt |
463 |
Q |
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| T |
8168220 |
tttcgttacatgagtttccgctgtttatgaacttattattttaattgctattcattgaattttagatctttcctacttttattgggtgaatgatcatttt |
8168319 |
T |
|
| Q |
464 |
ggttcctgattctgcacctcgctgtcataatgtctttggctcatgattaaatacaaaatagtatctggatatatacttccgttatcagttttgtccctga |
563 |
Q |
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| T |
8168320 |
ggttcctgattctgcacctcgctgtcataacgtctttggctcatgattaaatacaaaatagtctctggatatgtacttccattatcagttttgtccctga |
8168419 |
T |
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| Q |
564 |
catttaaaacttcatgaggtgacaaatgttttgggccgacgaggtaaatgacgtggcacaat |
625 |
Q |
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| T |
8168420 |
catttaaaacttcatgaggtgacaaatgttttgggccgacgaggtaaatgacgtggcacaat |
8168481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 329
Target Start/End: Original strand, 8143018 - 8143348
Alignment:
| Q |
12 |
atgaatgggatgcagggtacacagtacgatttggaataatttatgtcgatttcgttaacaatttgaaaagatatcccaagtactctgctttttggctgca |
111 |
Q |
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| T |
8143018 |
atgaatgggatgcagggtacacagtacgatttggaataatttatgtggatttcgttaacaaattgaagagatatcccaagtactctgctttttggctgca |
8143117 |
T |
|
| Q |
112 |
aaagtttcttctcaagggaaaacactaaatttgatgttcatttggcatgtctaagattttcccatgttgtttttcgaatttccaatgtcaccttagtata |
211 |
Q |
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| T |
8143118 |
aaagttccttctcaagggaaaacactaaatttgatgttcatttggcatgtctaagattttccattgttgtttgtcgaatttccagtgtcaccttagtatg |
8143217 |
T |
|
| Q |
212 |
ttacttgctttcatatgtattgagataattggtgataccaattatgta------------atgctgaaatgagtaagttaatatcaat-aaataaattgt |
298 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||| ||| ||||| ||| ||||||||||| |
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| T |
8143218 |
ttacttgcgctcatatgtattgagataattggtgataccaattaaataaaccttaagggcatgctgaaatgagtgagtcaatataaatgaaataaattgt |
8143317 |
T |
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| Q |
299 |
tggaacaactctcttccattctctagcaact |
329 |
Q |
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|||||||||| |||| ||||||||||||||| |
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| T |
8143318 |
tggaacaactatctttcattctctagcaact |
8143348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 520
Target Start/End: Original strand, 52316999 - 52317051
Alignment:
| Q |
469 |
ctgattctgcacctcgctgtcata-atgtctttggctcatgattaaatacaaa |
520 |
Q |
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| T |
52316999 |
ctgattctgcagctcgctgtcatataggtctctgactcatgattaaatacaaa |
52317051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 495 - 575
Target Start/End: Original strand, 8569455 - 8569535
Alignment:
| Q |
495 |
gtctttggctcatgattaaatacaaaatagtatctggatatatacttccgttatcagttttgtccctgacatttaaaactt |
575 |
Q |
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||||||| |||||||||||||||||| |||| | || || | |||| |||||||||||| ||||||||| || ||||||| |
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| T |
8569455 |
gtctttgactcatgattaaatacaaagtagtttatgaatgtgcactttcgttatcagtttagtccctgacgttaaaaactt |
8569535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 520
Target Start/End: Original strand, 6612438 - 6612491
Alignment:
| Q |
468 |
cctgattctgcacctcgctgtcataa-tgtctttggctcatgattaaatacaaa |
520 |
Q |
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| T |
6612438 |
cctgactctgcacctcgctgttataaatgtctctgactcatgattaaatacaaa |
6612491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 457 - 520
Target Start/End: Original strand, 5782422 - 5782486
Alignment:
| Q |
457 |
tcattttggttcctgattctgcacctcgctgtcata-atgtctttggctcatgattaaatacaaa |
520 |
Q |
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||||||| || ||||| ||||||||||||||||| | | |||| || |||||||||||||||||| |
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| T |
5782422 |
tcattttagtccctgactctgcacctcgctgtcacataggtctctgactcatgattaaatacaaa |
5782486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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