View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_high_24 (Length: 342)
Name: NF2336_high_24
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_high_24 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 7 - 342
Target Start/End: Complemental strand, 4211510 - 4211175
Alignment:
| Q |
7 |
aatatcaacaacttcaaacgtacgaaaatgaaatccatgttcctcaacttgctagatctccttctgttttacaaagactcaaatccattaacctttatag |
106 |
Q |
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| T |
4211510 |
aatatcaacaacttcaaacgtacgaaaatgaaatccatgttcctcaacttgctagatctccttctgttttacaaagactcaaatccattaacctttatag |
4211411 |
T |
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| Q |
107 |
ttacttacctacacaacccttcactacaaagctctcacccgacaacagtaacaacgttttcactcatgaaactcataaacaacacgtggaagttaaggaa |
206 |
Q |
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| T |
4211410 |
ttacttacctacacaacccttcactacaaagctctcacccgacaacagtaacaacgttttcactcatgaaactcataaacaacacgtggaagttaaggaa |
4211311 |
T |
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| Q |
207 |
acagaggaggaacatgaggaagatgatgttttgggacatataagagacaacctaggaggaagctacgaagaagagggacatgtttctatagaagaggttt |
306 |
Q |
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| T |
4211310 |
acagaggaggaacatgaggaagatgatgttttgggacatataagagacaacctaggaggaagctacgaagaagagggacatgtttctatagaagaggttt |
4211211 |
T |
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| Q |
307 |
tcatgaagttgcaaggcaaaggaggtaatttcacaa |
342 |
Q |
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| T |
4211210 |
tcatgaagttgcaaggccaaggaggtaatttcacaa |
4211175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 4211596 - 4211552
Alignment:
| Q |
59 |
tagatctccttctgttttacaaagactcaaatccattaaccttta |
103 |
Q |
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| T |
4211596 |
tagatctccttctgttttacaaagactcaaatccatcaactttta |
4211552 |
T |
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