View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_high_25 (Length: 327)
Name: NF2336_high_25
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 15447112 - 15446899
Alignment:
| Q |
7 |
gagatgaagtcaaagatcataaataaataaataaattgtgcacaagcattatattccaggaacatctatgtatgttgcatgaaggagagttatgttgaaa |
106 |
Q |
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| T |
15447112 |
gagaagaagtcaaagatcataaataaataaataaattgtgcacaagcattatattccaggaacatctatgtatgttgcatgaaggagagttatgttgaaa |
15447013 |
T |
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| Q |
107 |
atgcaattgttccgatttaaatttgatggcattaattgaattttcaaccttatatattttcatttttaaagactgttttgaaaagaagcgaaatacatca |
206 |
Q |
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| T |
15447012 |
atgcaattgttccgatttaaatttgttggc----attgaattttcaaccttatatattttcatttttaaagactattttgaaaagaagcgaagtacatca |
15446917 |
T |
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| Q |
207 |
tccgatcattattataag |
224 |
Q |
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| T |
15446916 |
ttcggtcactattataag |
15446899 |
T |
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