View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2336_high_30 (Length: 298)
Name: NF2336_high_30
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_high_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 4210847 - 4211117
Alignment:
| Q |
19 |
aatcatgattattaattaatcttaatttacttgctacttcctttgttaatcatatccttatacctcataatagaatcaatcctctgcaacttcaactgct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4210847 |
aatcatgattattaattaatcttaatttacttgctacttcctttgttaatcatatccttatacctcataatagaatcaatcctctgcaacttcaactgct |
4210946 |
T |
|
| Q |
119 |
gcttaaacttgttgatgaaatcatcagccttagaatcaaccaactcatcctcatccactgcagccggaacaaccttcgcctctttcacggtggctggccg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4210947 |
gcttaaacttgttgatgaaatcatcagccttagaatcaaccaactcatcctcatccactgcagccggaacaaccttcgcctctttcacggtggctggccg |
4211046 |
T |
|
| Q |
219 |
gcgtttctccacaatgtcatcttccttaaaatgtgaaaaagcagatttactgctagcagatttcttcatct |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4211047 |
gcgtttctccacaatgtcatcttccttaaaatgtgaaaaagcagatttactgctagcagatttcttcatct |
4211117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University