View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2336_high_34 (Length: 275)

Name: NF2336_high_34
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2336_high_34
NF2336_high_34
[»] chr4 (3 HSPs)
chr4 (13-262)||(36614762-36615011)
chr4 (170-257)||(15154547-15154634)
chr4 (68-98)||(36614992-36615022)
[»] chr1 (1 HSPs)
chr1 (171-237)||(28553474-28553540)
[»] chr8 (2 HSPs)
chr8 (170-239)||(13539722-13539791)
chr8 (170-239)||(13684683-13684752)
[»] chr6 (1 HSPs)
chr6 (170-232)||(31817698-31817759)
[»] chr3 (1 HSPs)
chr3 (170-232)||(11271504-11271566)
[»] chr2 (1 HSPs)
chr2 (170-226)||(35406663-35406719)


Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 262
Target Start/End: Complemental strand, 36615011 - 36614762
Alignment:
Q  13 cataggtaaattgggtttaaacttataacgcatatccttttaagtcattgtagatatgcagaatctcataggtaaattgggtttaatctcataggtaaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36615011 cataggtaaattgggtttaaacttataacgcatatccttttaagtcattgtagatatgcagaatctcataggtaaattgggtttaatctcataggtaaat 36614912  T
Q  113 tgtgatcgtgcagggcagtgtcgtaacaacatgcatgattgtgcacccttcctgcagctattcaacctaagtctagactctattttattaaaattcattt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36614911 tgtgatcgtgcagggcagtgtcgtaacaacatgcatgattgtgcacccttcctgcagctattcaacctaagtctagactctattttattaaaattcattt 36614812  T
Q  213 tttaatctactctcatcattgtttaatctaagaacaaaaatcaaacaaag 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36614811 tttaatctactctcatcattgtttaatctaagaacaaaaatcaaacaaag 36614762  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 170 - 257
Target Start/End: Original strand, 15154547 - 15154634
Alignment:
Q  170 ctattcaacctaagtctagactctattttattaaaattcattttttaatctactctcatcattgtttaatctaagaacaaaaatcaaa 257  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||| |||||||||||||||| |||||| ||||||    
T  15154547 ctattcaacctaagtctagactcaattttattaaaattcattttctaatctaatctcgtcattgtttaatctaataacaaatatcaaa 15154634  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 98
Target Start/End: Complemental strand, 36615022 - 36614992
Alignment:
Q  68 atgcagaatctcataggtaaattgggtttaa 98  Q
    |||||||||||||||||||||||||||||||    
T  36615022 atgcagaatctcataggtaaattgggtttaa 36614992  T

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Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 28553474 - 28553540
Alignment:
Q  171 tattcaacctaagtctagactctattttattaaaattcattttttaatctactctcatcattgttta 237  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||  |||||||    
T  28553474 tattcaacccaagtctagactctattttattaaaattcattttctaatctaatctcattgttgttta 28553540  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 13539791 - 13539722
Alignment:
Q  170 ctattcaacctaagtctagactctattttattaaaattcattttttaatctactctcatcattgtttaat 239  Q
    |||||||||  |||| |||||| |||||||||||||||| |||| ||||||||||||||| |||||||||    
T  13539791 ctattcaactcaagtttagactttattttattaaaattcgttttctaatctactctcatcgttgtttaat 13539722  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 239
Target Start/End: Original strand, 13684683 - 13684752
Alignment:
Q  170 ctattcaacctaagtctagactctattttattaaaattcattttttaatctactctcatcattgtttaat 239  Q
    |||||||||  |||| |||||| |||||||||||||||| |||| ||||||||||||||| |||||||||    
T  13684683 ctattcaactcaagtttagactttattttattaaaattcgttttctaatctactctcatcgttgtttaat 13684752  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 31817759 - 31817698
Alignment:
Q  170 ctattcaacctaagtctagactctattttattaaaattcattttttaatctactctcatcatt 232  Q
    |||||||||| ||||| ||||||||||||| ||||||||||||| ||||||| ||| ||||||    
T  31817759 ctattcaacccaagtcgagactctatttta-taaaattcattttctaatctaatcttatcatt 31817698  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 11271504 - 11271566
Alignment:
Q  170 ctattcaacctaagtctagactctattttattaaaattcattttttaatctactctcatcatt 232  Q
    |||||||||  ||||||||| ||||||||||| |||||| |||| ||||||| ||||||||||    
T  11271504 ctattcaactgaagtctagaatctattttatttaaattctttttctaatctaatctcatcatt 11271566  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 35406663 - 35406719
Alignment:
Q  170 ctattcaacctaagtctagactctattttattaaaattcattttttaatctactctc 226  Q
    |||||||| | |||||||||||||||||||||| ||||  |||| ||||||| ||||    
T  35406663 ctattcaaaccaagtctagactctattttattacaatttgttttctaatctaatctc 35406719  T

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