View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_high_36 (Length: 272)
Name: NF2336_high_36
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_high_36 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 26 - 257
Target Start/End: Complemental strand, 3684813 - 3684583
Alignment:
| Q |
26 |
aaagaacccaataatttcctttgtatacctatcaagaagacaaaggtaacattacctacatttcatgtctttatttttccatttaaaataaaaaatctag |
125 |
Q |
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| T |
3684813 |
aaagaacccagtaatttcctttgtatacctatcaaga---caaaggtaacattacctacatttcatgtccttatttttccatttaaaataaaaaatctag |
3684717 |
T |
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| Q |
126 |
aactcaatata--aatgaatttcatactttaatttacttcaaacactttcatttgttaatggagtgtatcaacaacgcttatataatctgaaattgtatc |
223 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3684716 |
aactcaatatataaacgaatttcatactttaatttacttcaaacactttcatttgttaatggagtgtatcaacaacgcttatataatctgaaattgtatc |
3684617 |
T |
|
| Q |
224 |
ggaaagagtgtgaaacaaattatgtcaccatatc |
257 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
3684616 |
ggaaagagtgtgaaacaaattatgtcaccatatc |
3684583 |
T |
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