View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2336_high_38 (Length: 257)
Name: NF2336_high_38
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_high_38 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 6 - 233
Target Start/End: Original strand, 659505 - 659732
Alignment:
| Q |
6 |
gtccaagaatatgctctcttcgtgtgttttggatgaaacattgctcctaccaaataccaataatgtttctaaaaatgaagaatatttcattcatcggatc |
105 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
659505 |
gtccaataatatgctctcttcgtgtgttttggatgaaacattgctcctaccaaataccaataatgtttctaaaaatgaagaatatttcattcatcggatc |
659604 |
T |
|
| Q |
106 |
acttggtcatggtatatgcatgagatatgcaaaatgatagaagaaagagtgttctacaaactagaaattgccaactttgtaatggcaaattagagagatt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
659605 |
acttggtcatggtatatgcatgagatatgcaaaatgatagaagaaagagtattctacaaactagaaattgccaactttgtaatggcaaattagagagatt |
659704 |
T |
|
| Q |
206 |
gatgagaactaaataaataaaacgagac |
233 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
659705 |
gatgagaactaaataaataaaacgagac |
659732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University