View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2336_high_39 (Length: 253)

Name: NF2336_high_39
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2336_high_39
NF2336_high_39
[»] chr7 (4 HSPs)
chr7 (124-253)||(36724252-36724381)
chr7 (11-137)||(36723769-36723895)
chr7 (82-250)||(712146-712314)
chr7 (30-252)||(717354-717577)
[»] chr8 (1 HSPs)
chr8 (82-253)||(14541077-14541248)


Alignment Details
Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 124 - 253
Target Start/End: Original strand, 36724252 - 36724381
Alignment:
Q  124 actgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttctaagagcatccacatctttcacaaagtctagagaaaaatctgt 223  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  36724252 actgtctacaagcatctataatgcatctaaattcactactatcttatatgcttgttctaagagcatccacatccttcacagagtctagagaaaaatctgt 36724351  T
Q  224 attatcaaattgaaggtctgatgtccactc 253  Q
    ||||||||||||||||||||||||||||||    
T  36724352 attatcaaattgaaggtctgatgtccactc 36724381  T

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Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 36723769 - 36723895
Alignment:
Q  11 cataggtgtgggagttagtattatgtgggactatctgagctaactcatgagcaacctcattagcctgactttattaaactcaatttgagagttttgaaat 110  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| | |||||| |||||| |||||||||||| || |||||||||||||    
T  36723769 cataggtgtgagagctagtattatgtgggactatctgagctaactcgtgagcaatcccattagtctgactctattaaactcaacttaagagttttgaaat 36723868  T
Q  111 ctactatgaaataactgtctacaagca 137  Q
    |||||||||||||||||||||||||||    
T  36723869 ctactatgaaataactgtctacaagca 36723895  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 82 - 250
Target Start/End: Complemental strand, 712314 - 712146
Alignment:
Q  82 tattaaactcaatttgagagttttgaaatctactatgaaataactgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttct 181  Q
    ||||||||||||  |||||||||| ||||||| | ||||| |||| |||||| |||  |||||| |||| |||||||| | |||||| ||  | ||||||    
T  712314 tattaaactcaacatgagagttttaaaatctattttgaaacaactatctacatgcaagtataatacatccaaattcacaactatcttctacacatgttct 712215  T
Q  182 aagagcatccacatctttcacaaagtctagagaaaaatctgtattatcaaattgaaggtctgatgtcca 250  Q
    || |||||||||| | |||  | ||||||||| |||||||  ||||||||||||||||| |||||||||    
T  712214 aaaagcatccacaaccttcttagagtctagagcaaaatctacattatcaaattgaaggtatgatgtcca 712146  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 252
Target Start/End: Complemental strand, 717577 - 717354
Alignment:
Q  30 attatgtgggactatctgagctaactcatgagcaacctcattagcctgactt-tattaaactcaatttgagagttttgaaatctactatgaaataactgt 128  Q
    |||||||||| |||| ||||||||||| | ||  | | ||||||| || ||  ||||||||||||  |||||||||||||||||||| || ||||| |||    
T  717577 attatgtggggctatatgagctaactcgtaagtgatcccattagcttgtctcctattaaactcaacatgagagttttgaaatctactttggaataattgt 717478  T
Q  129 ctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttctaagagcatccacatctttcacaaagtctagagaaaaatctgtattat 228  Q
    |||||  || ||||||| |||| |||||||| | |||||  ||  | | |||||| |||||| ||| | |||  | |||||||||  ||||||  |||||    
T  717477 ctacattcaactataatacatccaaattcactactatctcctacacatcttctaaaagcatcaacaaccttcttagagtctagagctaaatctacattat 717378  T
Q  229 caaattgaaggtctgatgtccact 252  Q
    |||||||||||| |||||||||||    
T  717377 caaattgaaggtgtgatgtccact 717354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 82 - 253
Target Start/End: Complemental strand, 14541248 - 14541077
Alignment:
Q  82 tattaaactcaatttgagagttttgaaatctactatgaaataactgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttct 181  Q
    |||||||||||||  ||||||||| |||  |||| ||||| |  ||||||||| |||||||||| |||||||||| || |||||||| ||    ||||||    
T  14541248 tattaaactcaatacgagagtttttaaaattactttgaaacacttgtctacaaacatctataatacatctaaatttactattatcttctacatatgttct 14541149  T
Q  182 aagagcatccacatctttcacaaagtctagagaaaaatctgtattatcaaattgaaggtctgatgtccactc 253  Q
    || ||||||||||   |||  | ||||||||||||||| |  ||||||||||||||||| ||||||||||||    
T  14541148 aaaagcatccacaatcttctaagagtctagagaaaaatatacattatcaaattgaaggtatgatgtccactc 14541077  T

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