View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_high_40 (Length: 251)
Name: NF2336_high_40
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_high_40 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 29087564 - 29087323
Alignment:
| Q |
10 |
attatactatgtacaatgtaaatggtagatatctaaggaatggaatcagtgatttttcatttgcttccaaagttaggtttactaaagtcagattaattct |
109 |
Q |
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| T |
29087564 |
attatactatgtacaatgtaaatggtagatatctaaggaatggaatcagtgatttttcatttgcttccaaagttaggtttactaaagtcagattaattct |
29087465 |
T |
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| Q |
110 |
ggcattttgtctaccaagtaggtcccatagacagttcatcttgaccttttaagatttcattttccttttgtgtgttttcatatttgaattcctgtgctta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29087464 |
ggcattttgtctaccaagtaggtcccatagacagttcatcttgaccttttaagatttcattttccttttgtgtgttttcacatttgaattcctgtgctta |
29087365 |
T |
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| Q |
210 |
gtcctttccatatttccatccatagaatagtaaatcttatat |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
29087364 |
gtcctttccatatttccatccatagaatagtaaatcttatat |
29087323 |
T |
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