View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_high_55 (Length: 243)
Name: NF2336_high_55
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_high_55 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 47952438 - 47952221
Alignment:
| Q |
1 |
ccgtcgtcgtctccgtcaacctctttacctccgccgctccctccttcgtcctcctctcacctcaccaccacgtcgtccctgtcccattgaccggaatgaa |
100 |
Q |
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| T |
47952438 |
ccgtcgtcgtctccgtcaacctctttacctccaccgctccctcattcgtcctcctctcacctcaccaccacatcgtccctgtcccattgaccggaatgaa |
47952339 |
T |
|
| Q |
101 |
acgaagaagaaagagtggtagatctgagacggccgtcgttggt---gtcgtcgttaactagatcggatctgagacgaccggaaatccaaaaggttgacgg |
197 |
Q |
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||||||||||||||||||||||||||| |||||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||| || |
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| T |
47952338 |
acgaagaagaaagagtggtagatctgatacggccgttgttggtatcgtcgtcgttaattagatcggatctgagactaccggaaatccaaaaggttgatgg |
47952239 |
T |
|
| Q |
198 |
cggcgtgaatctgacgtg |
215 |
Q |
| |
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||||||| || ||||||| |
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| T |
47952238 |
cggcgtggatttgacgtg |
47952221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 26594427 - 26594286
Alignment:
| Q |
1 |
ccgtcgtcgtctccgtcaacctctttacctccgccgctccctccttcgtcctcctctcacctcaccaccacgtcgtccctgtcccattgaccggaatgaa |
100 |
Q |
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|||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| |
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| T |
26594427 |
ccgtcgtcgtctccatcaacttctttacctccaccactccctccttcgtcctcctctcgcctcaccgtcacgtcgtccctgtcccaccaaccggaatgaa |
26594328 |
T |
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| Q |
101 |
acgaaga---agaaagagtggtagatctgagacggccgtcgt |
139 |
Q |
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| T |
26594327 |
acgaagaagaagaaatagtggtaaatctgagacggtcgtcgt |
26594286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 16037088 - 16037035
Alignment:
| Q |
24 |
tttacctccgccgctccctccttcgtcctcctctcacctcaccaccacgtcgtc |
77 |
Q |
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|||| ||||||||||||||||| ||| |||||||||| |||||||||| ||||| |
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| T |
16037088 |
tttatctccgccgctccctcctccgttctcctctcacatcaccaccacttcgtc |
16037035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 35579418 - 35579361
Alignment:
| Q |
4 |
tcgtcgtctccgtcaacctctttacctccgccgctccctccttcgtcctcctctcacc |
61 |
Q |
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|||| |||||||||||| ||||| ||||| | ||||||||| ||||||||||||||| |
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| T |
35579418 |
tcgttgtctccgtcaacttctttgcctcccctactccctcctccgtcctcctctcacc |
35579361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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