View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_high_7 (Length: 457)
Name: NF2336_high_7
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 35064703 - 35064503
Alignment:
| Q |
16 |
atttcatcaccaaaccctaaccgttgctgttgcttctcgtggtttctgattcggtagggtttcgcttcgctggatttggattccatttttgttgatgctc |
115 |
Q |
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| T |
35064703 |
atttcatcaccaaaccctaaccgttcctgttgcttctcgtggtttctaattcggtagggtttcgcttcgctggatttggattccatttttgttgatgctc |
35064604 |
T |
|
| Q |
116 |
tcaagatcattcaagactccgtttcttatcgttcttgaagaattttagatttattttcattgttatagtggttcgatttattcgatcgtaacctagatag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
35064603 |
tcaagatcattcaagactccgtttcttatcgttcttgaagaaatttagatttattttcattgttatggtggttcgatttattcgatcgtgacctagatag |
35064504 |
T |
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| Q |
216 |
g |
216 |
Q |
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| |
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| T |
35064503 |
g |
35064503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 42815734 - 42815534
Alignment:
| Q |
16 |
atttcatcaccaaaccctaacc-gttgctgttgcttctcgtggtttctgattcggtagggtttcgcttcgctggatttggattccatttttgttgatgct |
114 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42815734 |
atttcatcaccaaaccctaacccgttgctgttgcttctcgcggtttctgattcggtagggtttcgcttcgctggatttggattccattgttgttgatgct |
42815635 |
T |
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| Q |
115 |
ctcaagatcattcaagactccgtttcttatcgttcttgaagaattttagatttattttcattgttatagtggttcgatttattcgatcgtaacctagata |
214 |
Q |
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| T |
42815634 |
ctcaagatcattcaagactccgtttcttatcgttcttgaagaattttagatttattttaatcgttctggtggttcgatttattcgatcgtaacctagata |
42815535 |
T |
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| Q |
215 |
g |
215 |
Q |
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| T |
42815534 |
g |
42815534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 43025892 - 43025726
Alignment:
| Q |
16 |
atttcatcaccaaaccctaaccgttgctgttgcttctcgtggtttctgattcggtagggtttcgcttcgctggatttggattccatttttgttgatgctc |
115 |
Q |
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||||||||||||||||||| |||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43025892 |
atttcatcaccaaaccctagacgttgctgttgctttacgcggtttcttgttcggtagggtttcgcttcgctggatttggattccattgttgttgatgctc |
43025793 |
T |
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| Q |
116 |
tcaagatcattcaagactccgttt----cttatcgttcttgaagaattttagatttattttcattgt |
178 |
Q |
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| T |
43025792 |
tcaagatcattcaagactccgtttcttacttatcgttcttgaagagttttagatttattttcattgt |
43025726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 353 - 449
Target Start/End: Complemental strand, 35064371 - 35064275
Alignment:
| Q |
353 |
gtgttaattcaatagagtaatttaccatggcggtgtattataaatttaagagtgcaaaagattattattcaattcctatggatggtcctttcatatc |
449 |
Q |
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| T |
35064371 |
gtgttaattcaatagagtaatttaccatggcggtgtattataaatttaagagtgcaaaagattattattcaattcctatggatggtcctttcatatc |
35064275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 354 - 449
Target Start/End: Complemental strand, 42815411 - 42815316
Alignment:
| Q |
354 |
tgttaattcaatagagtaatttaccatggcggtgtattataaatttaagagtgcaaaagattattattcaattcctatggatggtcctttcatatc |
449 |
Q |
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|||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
42815411 |
tgttaattcaatagagtattctacaatggcggtgtattataaatttaagagtgcaaaagattataattcaattccaatggatggtcctttcatatc |
42815316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 353 - 449
Target Start/End: Complemental strand, 43025627 - 43025531
Alignment:
| Q |
353 |
gtgttaattcaatagagtaatttaccatggcggtgtattataaatttaagagtgcaaaagattattattcaattcctatggatggtcctttcatatc |
449 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||| |
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| T |
43025627 |
gtgttaattgaatagagtaatttacaatggcggtgtattataaatttaagagtgcaaaagattaccattcaattccaatggatggtccttttatatc |
43025531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 375 - 446
Target Start/End: Original strand, 41562472 - 41562543
Alignment:
| Q |
375 |
taccatggcggtgtattataaatttaagagtgcaaaagattattattcaattcctatggatggtcctttcat |
446 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||||| |||||||| | ||||||||||||||||| |
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| T |
41562472 |
taccatggcggtgtattataaatttaaaagtgcaagagattatgattcaatttccatggatggtcctttcat |
41562543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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