View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_high_73 (Length: 201)
Name: NF2336_high_73
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_high_73 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 3744073 - 3744238
Alignment:
| Q |
15 |
cagagaagatttttggaatatggaacagagaagctttgcacaagagaaagcatatggcatagatagaaacagtgacacatcattcgggataaaacgctat |
114 |
Q |
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| T |
3744073 |
cagagaagatttttggaatatggaacagagaagctttgcacaagagaaagcatatggcatagattgaaacagtgacacatcattcgggataaaacgctat |
3744172 |
T |
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| Q |
115 |
gtttagcattattgaaacatagcaaaaacgttttatcccgtagcatcccaaatgatgtatcactgt |
180 |
Q |
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| T |
3744173 |
gtttagcattattgaaacatagcaaaaacgttttatcccgtagcatcccaaatgatgtatcactgt |
3744238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 3744278 - 3744217
Alignment:
| Q |
45 |
aagctttgcacaagagaaagcatatggcatag--atagaaacagtgacacatcattcgggat |
104 |
Q |
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| T |
3744278 |
aagctttacacaagagaaagcacatggcatagatataggaacagtgatacatcatttgggat |
3744217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 20196243 - 20196286
Alignment:
| Q |
37 |
gaacagagaagctttgcacaagagaaagcatatggcatagatag |
80 |
Q |
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| T |
20196243 |
gaacaaagaagttttgcacaagagaaagcatgtggcatagatag |
20196286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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