View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2336_high_8 (Length: 448)
Name: NF2336_high_8
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 2 - 430
Target Start/End: Original strand, 44566206 - 44566634
Alignment:
| Q |
2 |
acagatattagtgtttattgttttttgtcttgtaagtttgttgaattcagattcctactttgtctatggtattaatcgttgcagtgtgctgatatatttt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44566206 |
acagatattagtgtttattgttttttgtcttgtaagtttgttgaattcagattcctactttgtctatggtattaatcgttgcagtgtgctgatatatttt |
44566305 |
T |
|
| Q |
102 |
attatatattgcttttggcagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaagtctaatgccacattattcttctg |
201 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44566306 |
attatatattgctttttgcagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaagtctaatgccacattattcttctg |
44566405 |
T |
|
| Q |
202 |
agttgctcttcagaagagaaaataaatttctgtggtgtaaaaaatgatttttgttaagtgatattattttctttacctaatttacaggtgcctttgggtt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44566406 |
agttgctcttcagaagagaaaataaatttctgtggtgtaaaaaatgatttttgttaagtgatattattttctttacctaatttacaggtgcctttgggtt |
44566505 |
T |
|
| Q |
302 |
tggcagtcacatggacatttgcttttttgctgactgaaaacggccggatgaaacattgtcaagttaatacttctgatacaatgacatcacccccatggtt |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44566506 |
tggcagtcacatggacatttgcttttttgctgactgaaaacggccggatgaaacattgtcaagttaatacttctgatacaatgacatcacccccatggtt |
44566605 |
T |
|
| Q |
402 |
tagatttccctatccactgcaatggggta |
430 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44566606 |
tagatttccctatccactgcaatggggta |
44566634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 108 - 339
Target Start/End: Complemental strand, 36032874 - 36032639
Alignment:
| Q |
108 |
tattgcttttggcagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaagtctaatgccacattattcttctgagttgc |
207 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||| | |||||||| ||||||||||||||| ||||||| | ||| |||| ||||| | |
|
|
| T |
36032874 |
tattgctttctgcagtatcttcgtaagatatctgttcttggacaccgcatatttctaatatatgcagtaagtgcaatgccataatatccttccgagttac |
36032775 |
T |
|
| Q |
208 |
tcttcagaagagaaaataaatttctgtggtgtaaaaaatgatttttgttaagtgatat----tattttctttacctaatttacaggtgcctttgggtttg |
303 |
Q |
| |
|
||| || || ||||||||||||||| |||||| ||||||||| ||||||||||| | |||||| |||||||||||| ||||| |||||||||||| |
|
|
| T |
36032774 |
tctatagcagtgaaaataaatttctgctgtgtaacaaatgatttctgttaagtgatgttatatattttttttacctaatttgcaggttcctttgggtttg |
36032675 |
T |
|
| Q |
304 |
gcagtcacatggacatttgcttttttgctgactgaa |
339 |
Q |
| |
|
||| | |||||| || ||||||| |||||||||||| |
|
|
| T |
36032674 |
gcaattacatgggcagttgctttcttgctgactgaa |
36032639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 430
Target Start/End: Complemental strand, 36032553 - 36032470
Alignment:
| Q |
347 |
ggatgaaacattgtcaagttaatacttctgatacaatgacatcacccccatggtttagatttccctatccactgcaatggggta |
430 |
Q |
| |
|
|||||||| |||||| |||| ||||||| || |||| | |||| |||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
36032553 |
ggatgaaatattgtcgagttgatacttcgcatgcaatcaaatcatccccatggtttaaatttccctatccattgcaatggggta |
36032470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 36032968 - 36032901
Alignment:
| Q |
6 |
atattagtgtttattgttttttgtcttgtaagtttgttgaattcagattcctactttgtctatggtattaatc |
78 |
Q |
| |
|
||||||||| |||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||| ||| |
|
|
| T |
36032968 |
atattagtggttattgttttttcccttgtaagt-----gaattcagactcccactttgtctatggtattgatc |
36032901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 20122158 - 20122217
Alignment:
| Q |
120 |
cagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaagt |
179 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||| || || ||||||||| |
|
|
| T |
20122158 |
cagtatcttcgtaagatatctgttcttggacatcgcatatttctaatctacgcagtaagt |
20122217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University