View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_low_10 (Length: 441)
Name: NF2336_low_10
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 43714160 - 43714560
Alignment:
| Q |
18 |
aaaagatacaaatatgaaccaagccgagaatagttcatcaaaagtcagctggttcaaccagcaaattgtgtagctggatggtttactggattggttaagc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43714160 |
aaaagatacaaatatgaaccaagccgagaatagttcatcaaaagtcagctggttcaaccagcaaattgtgtagctggatggtttactggattggttaagc |
43714259 |
T |
|
| Q |
118 |
actttatggaggtttattgaactagtctataattcaaatgaattgtggtttcttgtcaaaatcaaatgaatacttctactggatgaacaataacatcact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43714260 |
actttatggaggtttattgaactagtctataattcaaatgaattgtggtttcttgtcaaaatcaaatgaatacttctactggatgaacaataacatcact |
43714359 |
T |
|
| Q |
218 |
ttaagcaaaagttctgggcaggaatcatactttgtttcttatttataatgaaccgcagaagtttaactactttgaaactaattatgaagtttcagggcct |
317 |
Q |
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| T |
43714360 |
ttaagcaaaagttctgggcaggaatcatactttgtttcttatttataataaaccgcagaagtttaactactttgaaactaattatgaagtttcagggcct |
43714459 |
T |
|
| Q |
318 |
aactcagcctcaaaaaattgacttgtaagtcaaagactgtctagactttataatatgtcaaatttggtactttttcctagtagtaaacaataaaacatgt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43714460 |
aactcagcctcaaaaaattgacttgtaagtcaaagattgtctagactttataatatgtcaaatttggtactttttcctagtagtaaacaataaaacatgt |
43714559 |
T |
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| Q |
418 |
t |
418 |
Q |
| |
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| |
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| T |
43714560 |
t |
43714560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 418
Target Start/End: Complemental strand, 52893581 - 52893165
Alignment:
| Q |
18 |
aaaagatacaaatatgaaccaagccgagaatagttcatcaaaagtcagctggttcaaccagcaaattgtgtagctggatggtttactggattggttaagc |
117 |
Q |
| |
|
|||||||||||||||||| |||| || ||||||||| || || ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
52893581 |
aaaagatacaaatatgaatcaagaagacaatagttcaacacaaaccagctggttcaaccacaaaattgtgtagctggatggtttactggatcggttaagc |
52893482 |
T |
|
| Q |
118 |
actttatggaggtttattgaactagtctataattcaaatgaattgtggtttcttgtcaaaa-tca------------aatg---aatacttctactggat |
201 |
Q |
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|| ||||||||||| |||||||||||||||||||||||| || | |||||||||||||||| ||| |||| |||||||||||||| | |
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| T |
52893481 |
accttatggaggttcattgaactagtctataattcaaataaactatggtttcttgtcaaaaatcattaagttaacaaaatggcgaatacttctactgggt |
52893382 |
T |
|
| Q |
202 |
gaacaataacatcactttaagcaaaagttctgggcagg-aatcatactttgtttcttatttataatgaaccgcagaagtttaactactttgaaactaatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| || ||||||||||||||||| |
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| T |
52893381 |
gaacaataacatcactttaagcaaaagttctgggcagggaatcatactttgtttcttatttatactgaattgcagaaacttg-ctactttgaaactaatt |
52893283 |
T |
|
| Q |
301 |
atgaagtttcagggcctaactcagcctcaaaaaattgacttgtaagtcaaagactgtctagactttataatatgtcaaatttggtactttttcctagtag |
400 |
Q |
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| ||||||||||||||||| ||||||||| ||||||||||| |||| || | | ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52893282 |
acgaagtttcagggcctaattcagcctcacaaaattgacttataaggcacaaattgtctagactttatactatgtcaaatttggtactttttcctagtag |
52893183 |
T |
|
| Q |
401 |
taaacaataaaacatgtt |
418 |
Q |
| |
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|||||||||||||||||| |
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| T |
52893182 |
taaacaataaaacatgtt |
52893165 |
T |
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