View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2336_low_11 (Length: 432)
Name: NF2336_low_11
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_low_11 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 1606132 - 1606545
Alignment:
| Q |
1 |
ctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1606132 |
ctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacccagggggcttactaaagtgtccatgaaagttttcatc |
1606231 |
T |
|
| Q |
101 |
accataactctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgt |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
1606232 |
accataactcttgaatattgttgccaaggcctgcccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgt |
1606331 |
T |
|
| Q |
201 |
ggaatgaaattccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1606332 |
ggaatgaaattccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaatt |
1606431 |
T |
|
| Q |
301 |
ttggaaaaccactgcggcattgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1606432 |
ttggaaaaccactgcggcattgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtct |
1606531 |
T |
|
| Q |
401 |
tgataacctgatat |
414 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
1606532 |
tgataacctgatat |
1606545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 1629430 - 1629843
Alignment:
| Q |
1 |
ctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1629430 |
ctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatc |
1629529 |
T |
|
| Q |
101 |
accataactctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgt |
200 |
Q |
| |
|
||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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|
| T |
1629530 |
accattactcttgaatattgttgccaaggtctgcccaagaaggttttgtacttgtcaacaacaggttttagatctgatgcagccctaatttgacaattgt |
1629629 |
T |
|
| Q |
201 |
ggaatgaaattccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1629630 |
ggaatgaaattccagtgttttggaatgggtcacctcgaccttgggcagtgatcatgtttgcttggccatctaaaggctttcttgcgaaaatgttacaatt |
1629729 |
T |
|
| Q |
301 |
ttggaaaaccactgcggcattgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtct |
400 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1629730 |
ttggaataccactgcggcgttgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtct |
1629829 |
T |
|
| Q |
401 |
tgataacctgatat |
414 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
1629830 |
tgataacctgatat |
1629843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 10821268 - 10820853
Alignment:
| Q |
1 |
ctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| |
|
|
| T |
10821268 |
ctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacctagggggctgactaaagtgtccataaaagttttcatc |
10821169 |
T |
|
| Q |
101 |
accataactctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgt |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10821168 |
accataactcttgaatattgttgccaaggtcttcctaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgt |
10821069 |
T |
|
| Q |
201 |
ggaatgaaattccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10821068 |
ggaatgaaattccagtgttttggaatggatcacctcgaccttgggcagtgatcatgttagcttggccatctaaaggttttcttgcgaaaatgttgcaatt |
10820969 |
T |
|
| Q |
301 |
ttggaaaaccactgcggcattgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtct |
400 |
Q |
| |
|
|||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||| |
|
|
| T |
10820968 |
ttggaataccactgcagcgttgccaaagatgaagtctacggtgccatagatgaagcattgtctgtaaaattgacgttgtgcatgagccatgagggtgtct |
10820869 |
T |
|
| Q |
401 |
tgataacctgatattg |
416 |
Q |
| |
|
|| ||||| ||||||| |
|
|
| T |
10820868 |
tggtaacccgatattg |
10820853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 2 - 414
Target Start/End: Original strand, 1623255 - 1623667
Alignment:
| Q |
2 |
tcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatca |
101 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1623255 |
tcatactctccataatacaatgtatcttgagcaaaatctgtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatca |
1623354 |
T |
|
| Q |
102 |
ccataactctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgtg |
201 |
Q |
| |
|
|||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1623355 |
ccataactcttgagaattgttgccaaggccttcccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtg |
1623454 |
T |
|
| Q |
202 |
gaatgaaattccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattt |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||| |
|
|
| T |
1623455 |
gaatgaaattccagtgttttggaatgggtcaccacgaccttgggctgtgatcatgttagcttggccatccaaaggctttcttgcgaaaatgttacagttt |
1623554 |
T |
|
| Q |
302 |
tggaaaaccactgcggcattgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtctt |
401 |
Q |
| |
|
||||| || ||||| || |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
1623555 |
tggaatactactgcagcgttgccaaagatgaagtctacggtgccatagatgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtctt |
1623654 |
T |
|
| Q |
402 |
gataacctgatat |
414 |
Q |
| |
|
|||| || ||||| |
|
|
| T |
1623655 |
gatagcccgatat |
1623667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 351
Target Start/End: Complemental strand, 2576132 - 2576071
Alignment:
| Q |
290 |
atgttacaattttggaaaaccactgcggcattgccaaagatgaagtctacggtgccatagat |
351 |
Q |
| |
|
|||||||||||||||||||| || || || ||||| || |||||||| |||||||||||||| |
|
|
| T |
2576132 |
atgttacaattttggaaaactacagctgcgttgccgaaaatgaagtcgacggtgccatagat |
2576071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 18780948 - 18781349
Alignment:
| Q |
1 |
ctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatc |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18780948 |
ctcatactcgccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatc |
18781047 |
T |
|
| Q |
101 |
accataactctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgt |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
18781048 |
accataactcttgaatattgttgccaaggcctgcccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccataatttgacaattgt |
18781147 |
T |
|
| Q |
201 |
ggaatgaaattccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18781148 |
ggaatgaaattccagtgttttggaatgggtcacctcgaccttgggccgtgatcatgtttgcttggccatctaaaggctttcttgcgaaaatgttacaatt |
18781247 |
T |
|
| Q |
301 |
ttggaaaaccactgcggcattgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtct |
400 |
Q |
| |
|
|||||| || |||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || |||||| |
|
|
| T |
18781248 |
ttggaacactactgcggcgttgccaaagataaagtcgacggtgccatagatgaagcattgtctgtaaaattgacgttgcgcatgggccataagggtgtct |
18781347 |
T |
|
| Q |
401 |
tg |
402 |
Q |
| |
|
|| |
|
|
| T |
18781348 |
tg |
18781349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 28 - 402
Target Start/End: Original strand, 12802541 - 12802915
Alignment:
| Q |
28 |
ttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatcaccataactctcgaatattgttgccaa |
127 |
Q |
| |
|
||||||||||| ||| | ||||||||||||||||| | || || || ||| | |||||||| | |||||| |||| |||||| || ||| |||||| |
|
|
| T |
12802541 |
ttgagcaaaattagtacctccccatggagaccaacccattggactgaccaaattatccatgaatgatttcatgaccacaactctagagtatctttgccag |
12802640 |
T |
|
| Q |
128 |
ggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatg |
227 |
Q |
| |
|
|||| ||||||||||| ||| | || | ||||| ||||| | ||| | || |||||||| ||| | ||||| | ||||||||||||||||| |||| |
|
|
| T |
12802641 |
ggccggcccaagaaggtgttgaatttcccgacaacgggcttgaaatctggcgcggccctaatctgagagttgtgaatcgaaattccagtgttttgaaatg |
12802740 |
T |
|
| Q |
228 |
ggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaaccactgcggcattgccaaa |
327 |
Q |
| |
|
||||| | ||||||||||| ||||||||||| ||||| || | |||||| |||| | | ||| | || ||||||||||| || || || |||||||| |
|
|
| T |
12802741 |
ggtcatcacgaccttgggccgtgatcatgtttgcttggccgtttaaaggccttctaacaagaatcatgcagttttggaaaactacggctgcgttgccaaa |
12802840 |
T |
|
| Q |
328 |
gatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttg |
402 |
Q |
| |
|
||||||||| ||||||||||||||| | |||| || ||||||||||||||||| ||| |||| || |||||||| |
|
|
| T |
12802841 |
gatgaagtcaacggtgccatagatgtaacattctctgtaaaattgacgttgtgcgtgaaccatgagggtgtcttg |
12802915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 278 - 352
Target Start/End: Complemental strand, 8767130 - 8767056
Alignment:
| Q |
278 |
tttcttgcgaaaatgttacaattttggaaaaccactgcggcattgccaaagatgaagtctacggtgccatagatg |
352 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || ||||| || ||||||||||| || || |||||||||||| |
|
|
| T |
8767130 |
tttcttgcgaaaatgttacaattttgcaaaactaccgcggcgttaccaaagatgaaatcaactgtgccatagatg |
8767056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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