View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_low_15 (Length: 415)
Name: NF2336_low_15
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 8e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 75 - 210
Target Start/End: Complemental strand, 40970940 - 40970805
Alignment:
| Q |
75 |
atacgagtgactcaaccaaaattggaaactgaatttttcaagtcctcctctttaaacaaacgaattagttcttcttcatcaacaccaaattctggagcat |
174 |
Q |
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| T |
40970940 |
atacgagtgactcaaccaaaattggaaactgaatttttcaagtcctcctctttaaacaaacgaattagttcttcttcatcaacaccaaattctggagcat |
40970841 |
T |
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| Q |
175 |
gactatttgtatttacatttactgaatcatgagatt |
210 |
Q |
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| T |
40970840 |
gactatttgtatttacatttactgaatcatgagatt |
40970805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 294 - 372
Target Start/End: Complemental strand, 40970809 - 40970731
Alignment:
| Q |
294 |
agattctggagcacatgaggggtagaacgtgtcaataaaaaagcatgacatgtgtgagctcaaaatacatactatgaat |
372 |
Q |
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| T |
40970809 |
agattctggagcacatgaggggtagaacgtgtcaataaaaaagcatgacatgtgtgagctcaaaatacatactatgaat |
40970731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 40974236 - 40974176
Alignment:
| Q |
15 |
catttattaataatgactcggataaaagtgatttagacatttatttccttagtatgtataa |
75 |
Q |
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| T |
40974236 |
catttattaataatgactcggataaaagtgatttagacatttattttcttagtatgtataa |
40974176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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