View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_low_16 (Length: 410)
Name: NF2336_low_16
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 386
Target Start/End: Complemental strand, 4050426 - 4050061
Alignment:
| Q |
17 |
acatagaagaaattaagatgagaaattaaaatggatcatataatatgaagtgaatttagctagctattgtcacatggggtgatggactaagagatgttga |
116 |
Q |
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| T |
4050426 |
acatagaagaaattaagatgagaaattaaaatggatcatataatatgaagtgaatttagcta----ttgtcacatggggtgatggactaagagatgttga |
4050331 |
T |
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| Q |
117 |
ctactcccaacttcgtgtaagtaacggtctaagtccaaattcccatgatttaggttgcccaacgttgaagccatggtttgtgcaattcaatatgtctgcc |
216 |
Q |
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| T |
4050330 |
ctactcccaacttcgtgtaagtaacggtctaagtccaaattcccatgatttaggttgcccaacgttgaagccatggtttgtgcaattcaatatgtctgcc |
4050231 |
T |
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| Q |
217 |
cccacccccttaattatatgatatagtttcccatttaaatctagtggggttataaagtagaatatgtatcttatcgtatgtttgggatatttgaattaca |
316 |
Q |
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| T |
4050230 |
cccacccccttaattatatgatatagtttcccatttaaatctagtggggttataaagtagaatatgtatcttatcttatatttgggatatttgaattaca |
4050131 |
T |
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| Q |
317 |
aatgttgtccatagtacaaaggccactcatatgtttttcattattcgttcttgtttagataacacatatg |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4050130 |
aatgttgtccatagtacaaaggccactcatatgtttttcattattcgttcttgtttaaataacacatatg |
4050061 |
T |
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