View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_low_17 (Length: 409)
Name: NF2336_low_17
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_low_17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 10 - 409
Target Start/End: Complemental strand, 48429658 - 48429259
Alignment:
| Q |
10 |
attatactttacagaatatgaaaatgagacgaactatgcagcctcagatgcaagatgaagttgattatttattagtttatatttgagtcaaacagtttcc |
109 |
Q |
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| T |
48429658 |
attatagtttacagaatatgaaaatgagacgaactatgcagcctcagatgcaagatgaagttgattatttattagtttatatttgagtcaaacagtttcc |
48429559 |
T |
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| Q |
110 |
ttagttgtatccagtttttaaaattttcttgattgatttaattttatgtcgtcacctagcaatgaagaactgataaaatatgtaccgaaataaaatctgt |
209 |
Q |
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| T |
48429558 |
ttagttgtatccagtttttaaaattttcttgattgatttaattttatgtcgtcacctagcaatgaagaactgataaaatatgtaccgaaataaaatatgt |
48429459 |
T |
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| Q |
210 |
acatactttaattgagatgttaaaagttttttgtaatgactattttttagttaggtgacttcattgtgaagaacaatcagcaagacacatttatctttct |
309 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48429458 |
acatactttaattgagttgttaaaagttttttgtaatgactattttttagttaggtgacttcattgtgaagaacaatcagcaagacacatttatctttct |
48429359 |
T |
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| Q |
310 |
ctttacacattgtttttggctgggttgaagttgtggcattgaggtggttcttcactaaactagcatagtgtcatgtggagtgcttaaatcttttcaacca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48429358 |
ctttacacattgtttttggctgggttgaagttgtggcattgaggtggttcttcactaaactagcatagtgtcatgtggagtgcttaaatcttttcaacca |
48429259 |
T |
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