View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_low_19 (Length: 405)
Name: NF2336_low_19
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Complemental strand, 46047027 - 46046650
Alignment:
| Q |
18 |
tgaaaccctttcttcaaagaacgtttcagcttaccttcggtcccataaaacttgtatctggccactctcctctttctttttctctcagggtcattccacc |
117 |
Q |
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| T |
46047027 |
tgaaaccctttcttcaaagaacgtttcagcttaccttcggtcccataaaacttgtatctggccactctcctctttctttttctctcagggtcattccacc |
46046928 |
T |
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| Q |
118 |
atgacatactcttcttctttttcaccacagaacgtttttgcagcgtcttataatttttcaccacagaacgttctcgcgatgtctcataataattataatt |
217 |
Q |
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||||||| |||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46046927 |
atgacatgctcttcttctttttcaccacagaacgttctcgcagcgtctcataatttttcaccacagaacgttctcgcgatgtctcataataattataatt |
46046828 |
T |
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| Q |
218 |
agagtacagagatggagagttcatgctcctcccaacccacaatttggtgttgccgatgcttctcacatttgcatcatgtaggttggtaccagctgaccga |
317 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46046827 |
agagtacagagatggagagttaacgctcctcccaacccacaatttggtgttgccgatgcttctcacatttgcatcatgtaggttggtaccagctgaccga |
46046728 |
T |
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| Q |
318 |
cctagctggtattggagcacctccatctctgaaccctatatctttgttgatatatctatgtttttcgtttctcctatg |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46046727 |
cctagctggtattggagcacctccatctctgaaccctatatctttgttgatatatctatgtttttcgtttctcctatg |
46046650 |
T |
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