View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_low_20 (Length: 388)
Name: NF2336_low_20
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 21817697 - 21818025
Alignment:
| Q |
18 |
ctttctagtttatgtatccttgattaccatcaagaaaagtctgttaaatcgtcgggggttagcatattatacatggaaaatccttgaggaaagcgcgatc |
117 |
Q |
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| T |
21817697 |
ctttctagtttatgtatccttgattaccatcaagaaaagtctgttaaa-------gggttagcatattatacgtggaaaatccttgaggaaagcgcgatc |
21817789 |
T |
|
| Q |
118 |
agcgcatctcagactatctcaccaattttgttttgcagatatttacaccagctttcacaacaaaactaccaggagtcatgtattgattgtctttgtgaat |
217 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21817790 |
agcgcatctcagactatctcacaaattttgttttgcagatatttacagcagctttcacaacaaaactaccaggagtcatgcattgattgtctttgtgaat |
21817889 |
T |
|
| Q |
218 |
actttctagtatttatctcaattgtcatcaattgtacactaattatgcatccttttgttagttgtgttatgcgcatatgcttgcaatggagtaaaaattc |
317 |
Q |
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| T |
21817890 |
actttctagtatttatctcaattgtcatcaattgtacactaattacgcatcctttggttagttgtgttatgcgcatatgcttgcaatggagtaaaaattc |
21817989 |
T |
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| Q |
318 |
aacatgagcaaggtgagagaaactatgttactttct |
353 |
Q |
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| T |
21817990 |
aacatgagcaaggtgagagaaactatgttactttct |
21818025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 30 - 161
Target Start/End: Original strand, 14923436 - 14923567
Alignment:
| Q |
30 |
tgtatccttgattaccatcaagaaaagtctgttaaatcgtcgggggttagcatattatacatggaaaatccttgaggaaagcgcgatcagcgcatctcag |
129 |
Q |
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| T |
14923436 |
tgtatccttgattactatcaagaagagtatgttaaatcatggtgggttagcgtattatacgtggaaaatctttgaggacagcgcgatcagcgcgtctcag |
14923535 |
T |
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| Q |
130 |
actatctcaccaattttgttttgcagatattt |
161 |
Q |
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||| |||| ||||| ||||||||||| ||||| |
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| T |
14923536 |
actttctccccaatcttgttttgcaggtattt |
14923567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 18337108 - 18337247
Alignment:
| Q |
22 |
ctagtttatgtatccttgattaccatcaagaaaagtctgttaaatcgtcgggggttagcatattatacatggaaaatccttgaggaaagcgcgatcagcg |
121 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||| | |||||||||| |||||||| ||||||| |||||||| | ||||| || | |
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| T |
18337108 |
ctagtttatgcatccttgattaccatcaagaagagtctgttaaattcttgggggttagcgtattatacgcggaaaattcttgaggacaacgcgaccatca |
18337207 |
T |
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| Q |
122 |
catctcagactatctcaccaattttgttttgcagatattt |
161 |
Q |
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| T |
18337208 |
tgtctcagactatctcaccaattttgttttgtaggtattt |
18337247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 19429832 - 19429970
Alignment:
| Q |
22 |
ctagtttatgtatccttgattaccatcaagaaaagtctgttaaatcgtcgggggttagcatattatacatggaaaatccttgaggaaagcgcgatcagcg |
121 |
Q |
| |
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||||||| |||||||||| |||| ||||| ||||||||||| | |||||||||||| || || |||||||||||||||| |||| ||||||| |
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| T |
19429832 |
ctagtttctgtatccttggttacttctaagaagggtctgttaaatact-gggggttagcattctacacgcggaaaatccttgaggacagcgtgatcagca |
19429930 |
T |
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| Q |
122 |
catctcagactatctcaccaattttgttttgcagatattt |
161 |
Q |
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| T |
19429931 |
cgtctcaaactttttcattaattttgttttgcaggtattt |
19429970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 154
Target Start/End: Complemental strand, 42312960 - 42312929
Alignment:
| Q |
123 |
atctcagactatctcaccaattttgttttgca |
154 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
42312960 |
atctcagactatctcaccaattttgttttgca |
42312929 |
T |
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