View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2336_low_24 (Length: 379)

Name: NF2336_low_24
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2336_low_24
NF2336_low_24
[»] chr4 (35 HSPs)
chr4 (190-369)||(9770793-9770975)
chr4 (5-176)||(5994880-5995051)
chr4 (1-172)||(27654478-27654649)
chr4 (1-178)||(37586474-37586651)
chr4 (1-156)||(51904624-51904779)
chr4 (64-171)||(3976404-3976511)
chr4 (47-176)||(40661979-40662106)
chr4 (1-157)||(26001446-26001600)
chr4 (25-164)||(5027428-5027566)
chr4 (39-142)||(32949582-32949685)
chr4 (1-154)||(19677278-19677426)
chr4 (44-145)||(51340015-51340116)
chr4 (6-90)||(16318881-16318965)
chr4 (29-157)||(47109231-47109359)
chr4 (62-173)||(43515286-43515397)
chr4 (19-154)||(56328697-56328832)
chr4 (1-149)||(8567798-8567946)
chr4 (1-154)||(19676556-19676701)
chr4 (66-175)||(26329363-26329472)
chr4 (1-109)||(5545642-5545750)
chr4 (69-149)||(8586541-8586621)
chr4 (100-156)||(16318421-16318477)
chr4 (47-163)||(24106701-24106817)
chr4 (59-126)||(3888651-3888718)
chr4 (124-179)||(37586457-37586512)
chr4 (183-261)||(39654931-39655009)
chr4 (19-72)||(39401946-39401999)
chr4 (33-79)||(32846185-32846231)
chr4 (1-51)||(37586585-37586635)
chr4 (99-177)||(44832572-44832650)
chr4 (83-124)||(21776935-21776976)
chr4 (61-162)||(42862489-42862590)
chr4 (66-114)||(2088738-2088786)
chr4 (66-158)||(39016678-39016770)
chr4 (194-226)||(47288201-47288233)
[»] chr8 (34 HSPs)
chr8 (13-176)||(45524896-45525059)
chr8 (1-178)||(24683566-24683743)
chr8 (57-176)||(28485445-28485564)
chr8 (45-181)||(42473955-42474089)
chr8 (2-145)||(37927482-37927625)
chr8 (1-177)||(45218525-45218699)
chr8 (5-83)||(38091440-38091518)
chr8 (3-147)||(29011079-29011223)
chr8 (31-128)||(9008980-9009077)
chr8 (21-126)||(9953697-9953802)
chr8 (103-177)||(6891578-6891652)
chr8 (104-158)||(38091386-38091440)
chr8 (1-178)||(13407332-13407509)
chr8 (109-176)||(24683690-24683757)
chr8 (47-173)||(16314329-16314455)
chr8 (58-175)||(24184365-24184482)
chr8 (183-260)||(29025367-29025444)
chr8 (47-179)||(13105375-13105506)
chr8 (44-140)||(14636086-14636182)
chr8 (26-178)||(18413485-18413636)
chr8 (194-262)||(37754680-37754748)
chr8 (68-162)||(6387574-6387666)
chr8 (185-228)||(38958470-38958513)
chr8 (194-244)||(12295059-12295109)
chr8 (140-182)||(30085526-30085568)
chr8 (89-179)||(35689474-35689564)
chr8 (90-155)||(9952854-9952919)
chr8 (47-124)||(15905360-15905437)
chr8 (64-109)||(27799277-27799322)
chr8 (64-177)||(32022914-32023027)
chr8 (109-178)||(38091469-38091538)
chr8 (194-262)||(13106598-13106666)
chr8 (140-172)||(20545933-20545965)
chr8 (90-162)||(28413966-28414038)
[»] chr2 (35 HSPs)
chr2 (25-178)||(42669762-42669915)
chr2 (1-179)||(19193511-19193689)
chr2 (1-181)||(18949203-18949383)
chr2 (1-144)||(19953424-19953567)
chr2 (1-162)||(31494219-31494378)
chr2 (1-145)||(6420463-6420605)
chr2 (1-160)||(43400146-43400305)
chr2 (75-162)||(8163542-8163629)
chr2 (25-114)||(4024748-4024837)
chr2 (23-173)||(19190630-19190782)
chr2 (13-170)||(37077963-37078120)
chr2 (1-174)||(20458912-20459075)
chr2 (1-61)||(35523456-35523516)
chr2 (102-158)||(19954119-19954175)
chr2 (130-178)||(35523378-35523426)
chr2 (190-262)||(37037352-37037424)
chr2 (67-109)||(6951953-6951995)
chr2 (202-263)||(5054056-5054117)
chr2 (1-126)||(30706316-30706441)
chr2 (1-102)||(31859103-31859204)
chr2 (90-177)||(41805873-41805960)
chr2 (108-179)||(43400251-43400322)
chr2 (194-244)||(3412457-3412507)
chr2 (66-176)||(31395518-31395628)
chr2 (47-140)||(385035-385128)
chr2 (109-162)||(6420463-6420516)
chr2 (143-172)||(6951924-6951953)
chr2 (102-162)||(3804595-3804655)
chr2 (124-176)||(19193497-19193549)
chr2 (118-162)||(20459031-20459075)
chr2 (135-179)||(35523489-35523533)
chr2 (194-254)||(35589280-35589339)
chr2 (66-162)||(42182900-42182996)
chr2 (68-128)||(44674589-44674649)
chr2 (90-162)||(45554578-45554650)
[»] chr6 (11 HSPs)
chr6 (19-177)||(25326827-25326985)
chr6 (19-177)||(26159362-26159520)
chr6 (13-148)||(26170911-26171046)
chr6 (1-177)||(6163527-6163703)
chr6 (3-176)||(12690249-12690422)
chr6 (1-178)||(29610245-29610422)
chr6 (90-162)||(5106309-5106381)
chr6 (47-173)||(31947261-31947387)
chr6 (183-262)||(26595456-26595535)
chr6 (140-178)||(10432144-10432182)
chr6 (90-154)||(34905355-34905419)
[»] chr1 (27 HSPs)
chr1 (1-172)||(18473650-18473821)
chr1 (1-172)||(18157039-18157208)
chr1 (1-167)||(28274792-28274958)
chr1 (45-176)||(18953217-18953347)
chr1 (25-124)||(7549634-7549734)
chr1 (7-176)||(40125857-40126022)
chr1 (25-145)||(11247798-11247918)
chr1 (13-161)||(25010005-25010152)
chr1 (26-177)||(21977183-21977334)
chr1 (71-172)||(14340999-14341100)
chr1 (45-145)||(15741860-15741960)
chr1 (47-172)||(1468443-1468566)
chr1 (35-109)||(33234470-33234544)
chr1 (1-178)||(13114678-13114855)
chr1 (1-105)||(46792945-46793049)
chr1 (57-176)||(5602624-5602742)
chr1 (66-177)||(14094074-14094185)
chr1 (1-79)||(4817180-4817257)
chr1 (109-165)||(18473768-18473824)
chr1 (1-145)||(21970286-21970430)
chr1 (118-162)||(7548747-7548791)
chr1 (112-176)||(33233986-33234050)
chr1 (46-112)||(2592965-2593031)
chr1 (66-176)||(11135736-11135846)
chr1 (33-97)||(39150047-39150112)
chr1 (104-176)||(13388331-13388403)
chr1 (66-162)||(32848656-32848752)
[»] chr7 (27 HSPs)
chr7 (1-179)||(2911755-2911933)
chr7 (6-179)||(23434690-23434860)
chr7 (25-156)||(24845462-24845593)
chr7 (1-132)||(46994371-46994502)
chr7 (25-145)||(44350183-44350303)
chr7 (2-176)||(4089988-4090160)
chr7 (1-130)||(20954722-20954851)
chr7 (1-173)||(37489902-37490074)
chr7 (13-173)||(25003360-25003520)
chr7 (67-143)||(29462076-29462152)
chr7 (1-179)||(24539131-24539309)
chr7 (47-172)||(39523576-39523701)
chr7 (7-140)||(37629857-37629986)
chr7 (44-178)||(35198697-35198831)
chr7 (1-167)||(35549658-35549824)
chr7 (75-176)||(38065400-38065499)
chr7 (66-177)||(17354600-17354711)
chr7 (1-178)||(17749689-17749866)
chr7 (80-133)||(32721014-32721067)
chr7 (71-144)||(33852548-33852621)
chr7 (118-175)||(37490030-37490087)
chr7 (108-179)||(2520627-2520698)
chr7 (143-176)||(24845436-24845469)
chr7 (100-177)||(25590492-25590569)
chr7 (1-178)||(27888277-27888453)
chr7 (88-140)||(3676316-3676368)
chr7 (183-259)||(40417881-40417957)
[»] chr3 (31 HSPs)
chr3 (19-178)||(7791823-7791982)
chr3 (44-174)||(22813323-22813453)
chr3 (1-154)||(10798285-10798438)
chr3 (1-176)||(49720010-49720185)
chr3 (13-163)||(214045-214194)
chr3 (1-178)||(7640603-7640780)
chr3 (23-148)||(44911635-44911760)
chr3 (5-149)||(53655419-53655564)
chr3 (1-145)||(34706590-34706734)
chr3 (25-158)||(38169025-38169158)
chr3 (5-132)||(46205544-46205671)
chr3 (1-154)||(40631204-40631357)
chr3 (35-145)||(11832146-11832255)
chr3 (1-162)||(27243056-27243217)
chr3 (45-176)||(10817369-10817501)
chr3 (194-252)||(37561830-37561888)
chr3 (28-110)||(52223463-52223545)
chr3 (47-130)||(9774208-9774291)
chr3 (1-95)||(43657831-43657923)
chr3 (109-176)||(53655401-53655468)
chr3 (56-126)||(8475201-8475271)
chr3 (90-177)||(20493542-20493629)
chr3 (103-162)||(55283167-55283226)
chr3 (90-176)||(5452157-5452243)
chr3 (58-148)||(44225900-44225990)
chr3 (47-116)||(46622175-46622244)
chr3 (68-124)||(13809130-13809186)
chr3 (92-176)||(28529250-28529334)
chr3 (104-180)||(42780663-42780739)
chr3 (90-162)||(46575959-46576031)
chr3 (70-162)||(50661599-50661691)
[»] chr5 (17 HSPs)
chr5 (1-145)||(25002014-25002158)
chr5 (6-140)||(36325471-36325604)
chr5 (1-97)||(41034438-41034534)
chr5 (47-177)||(10299881-10300011)
chr5 (80-178)||(1649545-1649643)
chr5 (45-176)||(20526751-20526882)
chr5 (64-176)||(32309477-32309589)
chr5 (48-179)||(43461423-43461554)
chr5 (25-110)||(23260204-23260289)
chr5 (48-173)||(33854022-33854147)
chr5 (109-177)||(25001999-25002067)
chr5 (1-131)||(6529882-6530012)
chr5 (5-145)||(7585014-7585154)
chr5 (184-262)||(33655298-33655376)
chr5 (90-128)||(39246653-39246691)
chr5 (183-260)||(34546523-34546600)
chr5 (194-254)||(15478777-15478836)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-172)||(296837-297008)
[»] scaffold0238 (1 HSPs)
scaffold0238 (33-132)||(15230-15329)
[»] scaffold1128 (1 HSPs)
scaffold1128 (140-178)||(1814-1852)
[»] scaffold0886 (1 HSPs)
scaffold0886 (47-176)||(3242-3371)


Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 190 - 369
Target Start/End: Complemental strand, 9770975 - 9770793
Alignment:
Q  190 tcactttctttgtaaattcatggttgttccaaaaattgttatataaatagttgtttgaataacacaactctttctcaaaatcctccaagatcagatcaat 289  Q
    |||||||||||||||| | ||| ||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  9770975 tcactttctttgtaaactaatgattgttccaaaaattgttatataaatggttgttcgaataacacaactgtttctcaaaatcctccaagatcagatcaat 9770876  T
Q  290 gcaatgggcagc---ggagttcaatacaatttcttccatgtttgcatcaatatttcacctgctgctttggaacatcttttctt 369  Q
    ||||||||||||    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9770875 gcaatgggcagcagacgagtccaatacaatttcttccatgtttgcatcaatatttcacctgctgctttggaacatcttttctt 9770793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 5994880 - 5995051
Alignment:
Q  5 tctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcat 104  Q
    ||||||||||||| ||||||||||| | ||||| |||| | ||||||||||||||||| |||||| |||||||||||||||||||||||||||  |||||    
T  5994880 tctcttttcaacactctctccaacattcactttctaattgacttaaatcatggtgggtctcacacattggaaatgggttccacttaaagtggtgagtcat 5994979  T
Q  105 acattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctc 176  Q
    |||||  ||||||||||||||| |||||| ||| |||||||||||||||||||| |||||||| || |||||    
T  5994980 acattagttttatccaataagagaatgagtgttaaagagagtgttgaaaagagaatgtccctagcaatcctc 5995051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 27654649 - 27654478
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||||||||||||||| |||||| |||||| | ||| | || || |||||||| ||||| |||||||| ||||||||||||||||||||||||||| ||    
T  27654649 acactctcttttcaacactctctcaaacactcaatttattattggtttaaatcaaggtggatttcacacgttggaaatgggttccacttaaagtggtggg 27654550  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacatt 172  Q
     ||||||||  ||||||||||||||| |||||| |||  |||||||||||||||||||||||||||| ||||    
T  27654549 acatacattagttttatccaataagagaatgagtgttagagagagtgttgaaaagagagtgtccctagcatt 27654478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 37586474 - 37586651
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    |||| |||||||||||| ||||||||||||| ||||| ||||  |||||||||||||||||| |||||||||| ||||||| ||||||||||||||| ||    
T  37586474 acaccctcttttcaacactctctccaacactcactttctaattagcttaaatcatggtgggtctcacactttgaaaatgggatccacttaaagtggtggg 37586573  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctctt 178  Q
    ||| | |||| ||| | ||||| | ||| |||| |||||| ||||||||||||||||||||||| || |||| |||||    
T  37586574 tcacatattggtttaagccaattaaaaagtgagtgttgaatagagtgttgaaaagagagtgtccttagcatttctctt 37586651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 51904624 - 51904779
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||||||||||||||| |||||| ||||||||| || | || ||||||||||||||||||| |||||||||| |||| |||||||||||||||| | ||    
T  51904624 acactctcttttcaacactctctctaacacttacattcttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtgatggg 51904723  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaaga 156  Q
    |||||||||||||| ||| ||||||| |||||| |   ||||||||||||||||||    
T  51904724 tcatacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaaga 51904779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 3976404 - 3976511
Alignment:
Q  64 tcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtc 163  Q
    ||||| ||| ||||||||||||||||||| |||| | |||||||||| ||||||| ||||||| |||||| |||||||||||||||||||| ||||||||    
T  3976404 tcacattttagaaatgggttccacttaaaatggtggatcatacattggttttatcaaataagagaatgagtgttgaagagagtgttgaaaatagagtgtc 3976503  T
Q  164 cctaacat 171  Q
    ||||||||    
T  3976504 cctaacat 3976511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 47 - 176
Target Start/End: Original strand, 40661979 - 40662106
Alignment:
Q  47 ttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagt 146  Q
    |||||| | ||||||||| |||||||||||||||||||||||| ||||||| ||  | ||||| |||||||||||||||| | |||  |||  |||||||    
T  40661979 ttaaattagggtgggttttacactttggaaatgggttccacttgaagtggtaggatacacattaattttatccaataagagagtgaatgtt--agagagt 40662076  T
Q  147 gttgaaaagagagtgtccctaacattcctc 176  Q
    |||||||| |||||||| ||| ||||||||    
T  40662077 gttgaaaaaagagtgtctctagcattcctc 40662106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 26001600 - 26001446
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||| |||||||||||  |||||||| ||| ||||| |||| |||||||| |||  | ||| |||||||||| ||||| ||| || |||||||| | |     
T  26001600 acactttcttttcaaca--ctctccaatactcactttctaattggcttaaaacataataggtctcacactttgaaaatgagtttcatttaaagtgatgga 26001503  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagag 157  Q
    |||||||||  ||||||||||||| | |||||  |||||||||||||||||||||||    
T  26001502 tcatacattacttttatccaataaaagaatgaatgttgaagagagtgttgaaaagag 26001446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 5027428 - 5027566
Alignment:
Q  25 caacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataa 124  Q
    ||||||| ||||||| || ||||||||||| | || || ||||| |||| |||| | ||| |||||||||| | ||||||| |||||||  |||||||||    
T  5027428 caacactcacttttttattggcttaaatcaagatgagtctcacattttgaaaatcgattcaacttaaagtgatgggtcatatattgattacatccaataa 5027527  T
Q  125 gaaaatgagggttgaagagagtgttgaaaagagagtgtcc 164  Q
     |||||||| ||| ||||||||||| ||||||||||||||    
T  5027528 -aaaatgagtgttaaagagagtgttcaaaagagagtgtcc 5027566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 39 - 142
Target Start/End: Complemental strand, 32949685 - 32949582
Alignment:
Q  39 taatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttg 138  Q
    |||| ||||||||||||||||||| | |||||||||||||  |||||| |||||||||| | |||||||||  ||||||||||||| |||||||| |||     
T  32949685 taattggcttaaatcatggtgggtcttacactttggaaattagttccagttaaagtggtggatcatacattagttttatccaataaaaaaatgagtgtta 32949586  T
Q  139 aaga 142  Q
    ||||    
T  32949585 aaga 32949582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 19677426 - 19677278
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||| |||||| |||| ||||||||||||| ||||| |||| || ||||||||| || | | |||||||||| ||||||||| ||||||||||| | ||    
T  19677426 acactatctttttaacaatctctccaacactcactttctaattggtttaaatcatagtagatctcacactttgaaaatgggtttcacttaaagtgatggg 19677327  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaa 154  Q
    | |     || |||||| |||||||| |||||| |||||||| |||||| ||||    
T  19677326 tta-----tggttttattcaataagagaatgagcgttgaagatagtgttaaaaa 19677278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 145
Target Start/End: Original strand, 51340015 - 51340116
Alignment:
Q  44 ggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagag 143  Q
    |||||||||||| |||||| ||||||||||||||| |||| ||||||||| ||| |||| ||||||| ||| ||| ||||| | |||||  |||||||||    
T  51340015 ggcttaaatcatagtgggtctcacactttggaaataggtttcacttaaagcggtgggtcgtacattggtttcatcaaataaaagaatgaatgttgaagag 51340114  T
Q  144 ag 145  Q
    ||    
T  51340115 ag 51340116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 16318965 - 16318881
Alignment:
Q  6 ctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccactta 90  Q
    |||||||||||| ||| ||||||| | ||||| |||| ||||||||||||| || || ||||||||||||||| |||||||||||    
T  16318965 ctcttttcaacactctttccaacaatcactttctaattggcttaaatcatgatgagtctcacactttggaaattggttccactta 16318881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 157
Target Start/End: Complemental strand, 47109359 - 47109231
Alignment:
Q  29 acttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaa 128  Q
    ||||||||||| || || ||||||||  ||| ||||||||||||||||||| |||  |||||||||||| |  |||||||| ||||||  |||||| | |    
T  47109359 acttactttttcattggtttaaatcaaagtgagtttcacactttggaaatgagttttacttaaagtggtggaacatacattaattttagtcaataaaaga 47109260  T
Q  129 atgagggttgaagagagtgttgaaaagag 157  Q
    ||||| ||| |||| |||||| |||||||    
T  47109259 atgagtgttaaagaaagtgtttaaaagag 47109231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 43515286 - 43515397
Alignment:
Q  62 tttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtg 161  Q
    |||||||||||||||||  ||| ||||||||||||| || |||||||| |||| |  |||||||||||  |  |||  ||||||||||||||| |||||     
T  43515286 tttcacactttggaaataagtttcacttaaagtggtgggacatacattaatttcaatcaataagaaaacaaatgttagagagagtgttgaaaatagagta 43515385  T
Q  162 tccctaacattc 173  Q
    ||||||||||||    
T  43515386 tccctaacattc 43515397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 56328832 - 56328697
Alignment:
Q  19 tctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatc 118  Q
    ||||||||||||| ||||||  || | |||||||||| ||| ||| |||||||| |||||||||  | |||||||||   |||||||  ||| ||| |||    
T  56328832 tctctccaacactcacttttgtattgacttaaatcatagtgtgttccacactttagaaatgggtatctcttaaagtgtcgggtcataggttggtttcatc 56328733  T
Q  119 caataagaaaatgagggttgaagagagtgttgaaaa 154  Q
    | |||||| |||||| ||| ||||||||||||||||    
T  56328732 cgataagagaatgagtgttaaagagagtgttgaaaa 56328697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 8567946 - 8567798
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||||| ||||||||| | |||| | |||| ||||||| |  |||||||||||||  | ||  ||  |||||| ||||| ||||||| |||||||| ||    
T  8567946 acactctattttcaacactttctctaccactcacttttttaatggcttaaatcatgacgagtcgcatgctttgggaatggattccactcaaagtggtggg 8567847  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgtt 149  Q
    ||||||| || ||| || |||||||| |||||  |||||||||||||||    
T  8567846 tcatacaatggtttcatgcaataagagaatgaatgttgaagagagtgtt 8567798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 19676701 - 19676556
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||| |||||||||||  ||||||| |||| ||||| |||| || ||||||||| || ||| |||||||||  ||||||||||||||||||||| |  |    
T  19676701 acactatcttttcaaca--ctctcca-cactcactttctaattggtttaaatcatagtaggtctcacactttaaaaatgggttccacttaaagtgatgag 19676605  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaa 154  Q
    | |     || |||||| |||||||| |||||| ||||||||||||||| ||||    
T  19676604 tta-----tggttttattcaataagataatgagcgttgaagagagtgttaaaaa 19676556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 175
Target Start/End: Complemental strand, 26329472 - 26329363
Alignment:
Q  66 acactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccc 165  Q
    ||||||| ||||||| ||||||||||| ||||    |||||||| |||||||||||||||||| | || ||| |||| ||| || ||||||||||| ||     
T  26329472 acacttttgaaatggattccacttaaaatggtaaaacatacattaattttatccaataagaaagtaagtgttaaagaaagtatttaaaagagagtgacca 26329373  T
Q  166 taacattcct 175  Q
    || |||||||    
T  26329372 tatcattcct 26329363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 5545750 - 5545642
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    |||||||||||| |||| |||||| || ||||||||||||||  ||||||||||  |||||| | ||| |||| ||||||   |||| ||||||||| ||    
T  5545750 acactctcttttgaacactctctctaatacttactttttaatttgcttaaatcaatgtgggtcttacattttgaaaatggagcccacataaagtggtggg 5545651  T
Q  101 tcatacatt 109  Q
     ||||||||    
T  5545650 acatacatt 5545642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 8586621 - 8586541
Alignment:
Q  69 ctttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgtt 149  Q
    |||||| ||||| ||||||| |||||||| ||||||||| || ||| || |||||||| |||||  |||||||||||||||    
T  8586621 ctttgggaatggattccactcaaagtggtgggtcatacaatggtttcatgcaataagagaatgaatgttgaagagagtgtt 8586541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 16318477 - 16318421
Alignment:
Q  100 gtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaaga 156  Q
    ||||||||||||||||||||||||||| |||||| |||||| | | |||||||||||    
T  16318477 gtcatacattgattttatccaataagagaatgagtgttgaacacactgttgaaaaga 16318421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 47 - 163
Target Start/End: Original strand, 24106701 - 24106817
Alignment:
Q  47 ttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagt 146  Q
    |||||||| ||||||| | |||| || |||||| ||||||||||||||  | || ||| ||||  ||| ||||||||||| | || | |||  |||||||    
T  24106701 ttaaatcaaggtgggtcttacacattagaaatgagttccacttaaagtcatgggacatgcattagtttcatccaataagagagtgggtgttagagagagt 24106800  T
Q  147 gttgaaaagagagtgtc 163  Q
    |||||||||||||||||    
T  24106801 gttgaaaagagagtgtc 24106817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 3888718 - 3888651
Alignment:
Q  59 gggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataaga 126  Q
    |||| ||||| ||||||||||||||||||||||| | || || |||||||| ||||| ||||||||||    
T  3888718 gggtctcacaatttggaaatgggttccacttaaattagtgggacatacattaattttctccaataaga 3888651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 37586512 - 37586457
Alignment:
Q  124 agaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctctta 179  Q
    ||||| |||| |||| |||||||||||||||||| ||||||||| |||||||||||    
T  37586512 agaaagtgagtgttggagagagtgttgaaaagagggtgtccctagcattcctctta 37586457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 39654931 - 39655009
Alignment:
Q  183 caatacgtcactttctttgtaaattcatggttgttccaaaaattgttatataaatagttgtttgaataacacaactctt 261  Q
    |||||| ||| |||||||||||||| ||||||||   ||||||| | || ||||||||||||  |||||||||||||||    
T  39654931 caatacctcattttctttgtaaatttatggttgtcttaaaaattatcatctaaatagttgttcaaataacacaactctt 39655009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 39401999 - 39401946
Alignment:
Q  19 tctctccaacacttactttttaatcggcttaaatcatggtgggtttcacacttt 72  Q
    ||||| ||||||||||||||| || ||||||||||||| ||||| |||||||||    
T  39401999 tctcttcaacacttacttttttattggcttaaatcatgatgggtctcacacttt 39401946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 32846231 - 32846185
Alignment:
Q  33 actttttaatcggcttaaatcatggtgggtttcacactttggaaatg 79  Q
    |||||||||| ||||||||||||  ||||| ||||||||||||||||    
T  32846231 actttttaattggcttaaatcatattgggtctcacactttggaaatg 32846185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 37586635 - 37586585
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaa 51  Q
    ||||||||||||||||| ||| | ||||||| |||||||||| ||||||||    
T  37586635 acactctcttttcaacactctattcaacactcactttttaattggcttaaa 37586585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 177
Target Start/End: Original strand, 44832572 - 44832650
Alignment:
Q  99 ggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctct 177  Q
    |||| ||||||||||| | ||||||| |||||||| | || |||||||| | ||||||||||||  ||| |||||||||    
T  44832572 ggtcctacattgatttcacccaataaaaaaatgagtgctggagagagtgctcaaaagagagtgttgctagcattcctct 44832650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 21776935 - 21776976
Alignment:
Q  83 tccacttaaagtggttggtcatacattgattttatccaataa 124  Q
    ||||| ||||||||| || |||||||||||||||||||||||    
T  21776935 tccacataaagtggtaggacatacattgattttatccaataa 21776976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 162
Target Start/End: Original strand, 42862489 - 42862590
Alignment:
Q  61 gtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagt 160  Q
    ||||||||||||| ||||||   |||| ||||||||| || ||||||||||||| | ||||||| ||| |||| | |  ||| |||| | ||||||||||    
T  42862489 gtttcacactttgaaaatggaacccacataaagtggtgggacatacattgatttcacccaataaaaaagtgagtgctagagaaagtgctcaaaagagagt 42862588  T
Q  161 gt 162  Q
    ||    
T  42862589 gt 42862590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 2088738 - 2088786
Alignment:
Q  66 acactttggaaatgggttccacttaaagtggttggtcatacattgattt 114  Q
    |||||||||||||||  ||||| ||||||||| || |||||||||||||    
T  2088738 acactttggaaatggaatccacataaagtggtgggacatacattgattt 2088786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 158
Target Start/End: Complemental strand, 39016770 - 39016678
Alignment:
Q  66 acactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagaga 158  Q
    |||||||||||||||   |||| |||| |||| || ||||||||||||| ||||||||| | | | || |||  |||||||||| ||||||||    
T  39016770 acactttggaaatggaacccacgtaaaatggtgggacatacattgatttcatccaataaaatagtaagtgttatagagagtgtttaaaagaga 39016678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 47288201 - 47288233
Alignment:
Q  194 tttctttgtaaattcatggttgttccaaaaatt 226  Q
    |||||||||||||| ||||||||||||||||||    
T  47288201 tttctttgtaaatttatggttgttccaaaaatt 47288233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 45524896 - 45525059
Alignment:
Q  13 caacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgat 112  Q
    ||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  45524896 caacactctctccaacactcactttttaattggcttaaatcatggtgggtttcacactttggaaatgggttccactcaaagtggtgggtcatacattgat 45524995  T
Q  113 tttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctc 176  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||    
T  45524996 tttatccaataagaaaatgagtgttgaagagagtgttgaaaagagagtgtccctggcattcctc 45525059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 24683743 - 24683566
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||||||||||||||| | ||||||||||| ||||| | || ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| ||    
T  24683743 acactctcttttcaacactatctccaacactcactttctgattggcttaaatcatgatgggtctcacattttggaaatgggttccacttaaagtggtggg 24683644  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctctt 178  Q
    ||| |||||| ||| |  |||| ||||| ||||  || |||||||||||||||||||||||||| || |||| |||||    
T  24683643 tcacacattggtttaagtcaattagaaagtgagtattaaagagagtgttgaaaagagagtgtccttagcatttctctt 24683566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 57 - 176
Target Start/End: Original strand, 28485445 - 28485564
Alignment:
Q  57 gtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaaga 156  Q
    |||||| |||||||||||||||||||||||||||||||||| || |||||||| |||| ||||||||||| ||| || |||   | || |||| ||||||    
T  28485445 gtgggtctcacactttggaaatgggttccacttaaagtggtgggacatacattaatttcatccaataagagaataagtgttagggggattgtttaaaaga 28485544  T
Q  157 gagtgtccctaacattcctc 176  Q
    |||||||||| |||||||||    
T  28485545 gagtgtccctgacattcctc 28485564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 45 - 181
Target Start/End: Complemental strand, 42474089 - 42473955
Alignment:
Q  45 gcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagaga 144  Q
    ||||||||||| |||||| |||||||||| |||||  |||||||||||||||| ||||| ||||| |||||||||||||| |||||||  |||||  | |    
T  42474089 gcttaaatcatagtgggtctcacactttgaaaatgaattccacttaaagtggtgggtcaaacattaattttatccaataaaaaaatgaatgttga--ata 42473992  T
Q  145 gtgttgaaaagagagtgtccctaacattcctcttatt 181  Q
    ||||| |||||||||| ||| || ||||| |||||||    
T  42473991 gtgttaaaaagagagtttccttagcattcatcttatt 42473955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 2 - 145
Target Start/End: Original strand, 37927482 - 37927625
Alignment:
Q  2 cactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggt 101  Q
    ||||||||||| |||||||||||||| ||| | ||||| || |||||||||||| ||| || ||||| ||||||||| | | | |||||||||| |  ||    
T  37927482 cactctctttttaacattctctccaatactcatttttttattggcttaaatcatagtgagtctcacattttggaaatagatactacttaaagtgatgagt 37927581  T
Q  102 catacattgattttatccaataagaaaatgagggttgaagagag 145  Q
    ||||||||| ||| |||||| |||| |||||| |||||||||||    
T  37927582 catacattggtttcatccaacaagagaatgagtgttgaagagag 37927625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 45218525 - 45218699
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||||||||||||||| |||| | ||||||   || || || || |||||||| |||||   ||||| |||||||||||||||||||||||||||| ||    
T  45218525 acactctcttttcaacactctcccaaacactctattctttattggtttaaatcaaggtggtcctcacattttggaaatgggttccacttaaagtggtggg 45218624  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctct 177  Q
     ||  ||||||||| ||||||||| | |  ||| |||  |||||||||  ||||||||||||||||| |||||||||    
T  45218625 acacgcattgatttcatccaataaaagagcgagtgtt--agagagtgtataaaagagagtgtccctagcattcctct 45218699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 38091518 - 38091440
Alignment:
Q  5 tctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggtt 83  Q
    ||||||||||||| ||||||||||||| ||||| |||| ||||||||||||| | ||| ||| ||||||||||||||||    
T  38091518 tctcttttcaacactctctccaacactcactttctaattggcttaaatcatgataggtctcatactttggaaatgggtt 38091440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 147
Target Start/End: Complemental strand, 29011223 - 29011079
Alignment:
Q  3 actctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtc 102  Q
    ||||| ||||||||| |||||| |||||| |||| || || || |||||||  |||| ||  |||||||||||||||||||||| | |||||||| || |    
T  29011223 actctattttcaacactctctcaaacactcacttctttattggtttaaatcgaggtgagtcacacactttggaaatgggttccattcaaagtggtaggac 29011124  T
Q  103 atacattgattttatccaataagaaaatgagggttgaagagagtg 147  Q
    |||||||  ||| ||||| ||||| |||||| |||  ||||||||    
T  29011123 atacattagtttcatccattaagagaatgagtgttagagagagtg 29011079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 9008980 - 9009077
Alignment:
Q  31 ttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaa 128  Q
    ||||||||| || |||||||||||  ||| || |||||||||| ||||||||||||||||||||| | || |||||||| |||| | | |||||||||    
T  9008980 ttacttttttattggcttaaatcaatgtgagtctcacactttgaaaatgggttccacttaaagtgatgggacatacattaatttcaccaaataagaaa 9009077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 9953697 - 9953802
Alignment:
Q  21 tctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatcca 120  Q
    |||| |||||| ||||||| || || |||||||| ||||  | |||||||||||||||| ||||||||||||||||| || || ||||| |||| ||||     
T  9953697 tctcaaacactcacttttttattggtttaaatcaaggtgaatctcacactttggaaatgagttccacttaaagtggtgggacacacattaatttcatccc 9953796  T
Q  121 ataaga 126  Q
    ||||||    
T  9953797 ataaga 9953802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 6891578 - 6891652
Alignment:
Q  103 atacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctct 177  Q
    |||||||| ||||||||||||||| || ||  ||| ||||||| |||||||| ||||||||| ||||||||||||    
T  6891578 atacattgtttttatccaataagagaacgaatgttaaagagagagttgaaaaaagagtgtccttaacattcctct 6891652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 38091440 - 38091386
Alignment:
Q  104 tacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagaga 158  Q
    ||||||| ||||||||||||||| |||||| ||| ||||||||||||||||||||    
T  38091440 tacattggttttatccaataagagaatgagtgttcaagagagtgttgaaaagaga 38091386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 13407332 - 13407509
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    |||||||||||| |||| |||||| |||||| | | | | || || ||||||||  ||||||   |||||||| |||| |   ||||||||| |||| ||    
T  13407332 acactctcttttgaacactctctctaacactcattctctcattgggttaaatcaatgtgggtcatacactttgaaaatagaacccacttaaaatggtggg 13407431  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctctt 178  Q
     ||||||||||||||||||||||| ||| | || |||  |||||||||  |||| |||||||  || |||||||||||    
T  13407432 acatacattgattttatccaataaaaaagttagtgttagagagagtgtccaaaaaagagtgttgctgacattcctctt 13407509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 24683690 - 24683757
Alignment:
Q  109 tgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctc 176  Q
    |||||| | ||||| ||||| |||| |||| ||| |||||||||||||||||||||||| ||||||||    
T  24683690 tgatttaagccaatcagaaagtgagtgttggagatagtgttgaaaagagagtgtccctagcattcctc 24683757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 173
Target Start/End: Original strand, 16314329 - 16314455
Alignment:
Q  47 ttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagt 146  Q
    |||||||| ||||||| ||||| |||  |||||| ||| |||||||||||| |  |||||||| |||||||||||||| | | |||| ||   ||||| |    
T  16314329 ttaaatcaaggtgggtctcacattttaaaaatggattcaacttaaagtggtggaacatacattaattttatccaataaaagagtgagtgtaagagagaat 16314428  T
Q  147 gttgaaaagagagtgtccctaacattc 173  Q
    ||| |||| | |||||| |||||||||    
T  16314429 gtttaaaataaagtgtcactaacattc 16314455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 175
Target Start/End: Complemental strand, 24184482 - 24184365
Alignment:
Q  58 tgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagag 157  Q
    ||||| |||||||||| |||||| ||||| |||||||| | || ||| |||| ||||  |||||||| | | || |  || || ||||||||||||||||    
T  24184482 tgggtctcacactttgaaaatggattccatttaaagtgatgggacatgcattaatttcttccaataaaagagtgcgtattaaaaagagtgttgaaaagag 24184383  T
Q  158 agtgtccctaacattcct 175  Q
    ||||||  ||||||||||    
T  24184382 agtgtcaataacattcct 24184365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 29025367 - 29025444
Alignment:
Q  183 caatacgtcactttctttgtaaattcatggttgttccaaaaattgttatataaatagttgtttgaataacacaactct 260  Q
    |||||| ||| |||||||||||| |  ||||||| |||||| |||| |||||||| | ||||| ||||||||||||||    
T  29025367 caatacctcattttctttgtaaaattttggttgtcccaaaagttgtcatataaatggatgtttaaataacacaactct 29025444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 179
Target Start/End: Original strand, 13105375 - 13105506
Alignment:
Q  47 ttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagt 146  Q
    |||||||| | ||||| |||||| ||||||||||||||| |||||| | || || |||||| |  ||| ||| ||||| | |   || ||| ||||||||    
T  13105375 ttaaatcaagatgggtctcacacattggaaatgggttcc-cttaaaatcgtgggacatacactagtttcatctaataaaagagcaagtgttaaagagagt 13105473  T
Q  147 gttgaaaagagagtgtccctaacattcctctta 179  Q
    | |||||||||||| ||||||||||| ||||||    
T  13105474 gctgaaaagagagtatccctaacattactctta 13105506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 140
Target Start/End: Complemental strand, 14636182 - 14636086
Alignment:
Q  44 ggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaa 140  Q
    ||||||||| ||| ||||| |||||||||  |||||| ||||| | ||| |||| ||||||| | || ||| | |||||||||||||||| ||||||    
T  14636182 ggcttaaataatgatgggtctcacactttaaaaatggtttccattcaaaatggtgggtcatataatggtttcacccaataagaaaatgagtgttgaa 14636086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 178
Target Start/End: Original strand, 18413485 - 18413636
Alignment:
Q  26 aacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataag 125  Q
    |||| ||||||||| || |  |||||||| | | ||| ||||||||||||||||| ||||||||||||| ||  | |||| ||| |||| || ||||||     
T  18413485 aacatttacttttttattgatttaaatcaagataggtctcacactttggaaatgg-ttccacttaaagttgtgagacatatattaatttcattcaataaa 18413583  T
Q  126 aaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctctt 178  Q
    | |||||  |||  ||||| |||| |||||||||||||  ||| |||||||||    
T  18413584 agaatgaacgttagagagaatgtttaaaagagagtgtcattaatattcctctt 18413636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 37754680 - 37754748
Alignment:
Q  194 tttctttgtaaattcatggttgttccaaaaattgttatataaatagttgtttgaataacacaactcttt 262  Q
    |||||||||||||| |  |||||||||||| |||| ||| |||| ||||||| ||||||||| ||||||    
T  37754680 tttctttgtaaatttaaagttgttccaaaagttgtcatacaaatggttgtttaaataacacacctcttt 37754748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 6387666 - 6387574
Alignment:
Q  68 actttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgt 162  Q
    |||||||||||||   |||| |||| |||| || ||||||||||||||||||||||| | | |||| |||  |||||||||  ||||||||||||    
T  6387666 actttggaaatggaacccacataaaatggtgggacatacattgattttatccaataaaagagtgagtgtt--agagagtgtccaaaagagagtgt 6387574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 38958513 - 38958470
Alignment:
Q  185 atacgtcactttctttgtaaattcatggttgttccaaaaattgt 228  Q
    |||| ||| |||||||||||||| ||||||||||||||||||||    
T  38958513 atacctcattttctttgtaaattgatggttgttccaaaaattgt 38958470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 12295059 - 12295109
Alignment:
Q  194 tttctttgtaaattcatggttgttccaaaaattgttatataaatagttgtt 244  Q
    |||||||||||||| |||||||||  ||||||||| | |||||||||||||    
T  12295059 tttctttgtaaatttatggttgtttaaaaaattgtcacataaatagttgtt 12295109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 30085526 - 30085568
Alignment:
Q  140 agagagtgttgaaaagagagtgtccctaacattcctcttattc 182  Q
    ||||||||||  ||||||||||||| |||||||||||||||||    
T  30085526 agagagtgttagaaagagagtgtccataacattcctcttattc 30085568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 35689564 - 35689474
Alignment:
Q  89 taaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctctta 179  Q
    ||||||||| || ||||||||||||| ||||||||| ||| |||| | |  |||||||| | |||||||||||| | || |||| ||||||    
T  35689564 taaagtggtgggacatacattgatttcatccaataaaaaagtgagtgctagagagagtgctcaaaagagagtgttcttaccattgctctta 35689474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 155
Target Start/End: Original strand, 9952854 - 9952919
Alignment:
Q  90 aaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaag 155  Q
    |||||||| || ||| ||||||||| ||||||||| |||||||| | |  ||||||||||||||||    
T  9952854 aaagtggtgggacatgcattgatttcatccaataaaaaaatgagtgctagagagagtgttgaaaag 9952919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 15905360 - 15905437
Alignment:
Q  47 ttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataa 124  Q
    |||||||| ||||||| ||||| |||| |||||| ||||||||||||  || |  |||||||| |||| |||||||||    
T  15905360 ttaaatcaaggtgggtctcacattttgaaaatggattccacttaaagcagtagaacatacattaatttcatccaataa 15905437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 27799277 - 27799322
Alignment:
Q  64 tcacactttggaaatgggttccacttaaagtggttggtcatacatt 109  Q
    |||||| |||||||| |||||||||||||||||| || ||||||||    
T  27799277 tcacacattggaaataggttccacttaaagtggtgggacatacatt 27799322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 32022914 - 32023027
Alignment:
Q  64 tcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtc 163  Q
    |||||||||  |||| ||||| |||| |||||||  | |||||||| ||||||| |||||| | | |||  ||| ||||||||||| ||||  |||||||    
T  32022914 tcacactttaaaaataggttctacttgaagtggtgaggcatacattaattttattcaataaaagattgaatgttaaagagagtgtttaaaaatgagtgtc 32023013  T
Q  164 cctaacattcctct 177  Q
    | ||||||| ||||    
T  32023014 cttaacatttctct 32023027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 38091469 - 38091538
Alignment:
Q  109 tgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctctt 178  Q
    |||||| | ||||| ||||| |||| |||| ||||||||||||||||||| |||  ||| ||||||||||    
T  38091469 tgatttaagccaattagaaagtgagtgttggagagagtgttgaaaagagaatgttgctagcattcctctt 38091538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 13106598 - 13106666
Alignment:
Q  194 tttctttgtaaattcatggttgttccaaaaattgttatataaatagttgtttgaataacacaactcttt 262  Q
    |||||||||||||| |||||||||  |||| |||| |  ||||| ||||||  ||||||||||||||||    
T  13106598 tttctttgtaaatttatggttgttataaaagttgtcacctaaatggttgttcaaataacacaactcttt 13106666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 172
Target Start/End: Complemental strand, 20545965 - 20545933
Alignment:
Q  140 agagagtgttgaaaagagagtgtccctaacatt 172  Q
    ||||||||||||||||||||| |||||||||||    
T  20545965 agagagtgttgaaaagagagtatccctaacatt 20545933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 28413966 - 28414038
Alignment:
Q  90 aaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgt 162  Q
    |||||||| || ||||||||||||| ||| ||||| ||| |||| | |  |||||||||||||||| ||||||    
T  28413966 aaagtggtgggacatacattgatttcatcgaataaaaaagtgagcgctagagagagtgttgaaaagtgagtgt 28414038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 7e-65; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 25 - 178
Target Start/End: Original strand, 42669762 - 42669915
Alignment:
Q  25 caacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataa 124  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||    
T  42669762 caacactcactttttaattggcttaaatcatggtgggtttcacactttggaaatgggtttcacttaaagtggtgggtcatacattgattctatccaataa 42669861  T
Q  125 gaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctctt 178  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  42669862 gaaaatgagtgttgaagagagtgttgaaaagagagcgtccctaacattcctctt 42669915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 19193511 - 19193689
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||  | |||||||||||||||| ||| ||||||||||| |||| ||||||||||||| ||    
T  19193511 acactctcttttcaacactctctccaacactcactttctaattagtttaaatcatggtgggtctcatactttggaaataggtttcacttaaagtggtggg 19193610  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctctta 179  Q
    |||||||||| ||||||||||||||| |||||| ||| ||||||||||||||||||||||||| ||| ||||| |||||    
T  19193611 tcatacattggttttatccaataagagaatgagtgttcaagagagtgttgaaaagagagtgtctctagcattcatctta 19193689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 18949203 - 18949383
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||||||||||||||| | ||||||||||| | ||| |||| ||||||||||||||||||| |||||||||  ||||||||||||||||||||| | |     
T  18949203 acactctcttttcaacactttctccaacactcaatttctaattggcttaaatcatggtgggtctcacactttaaaaatgggttccacttaaagtgatgga 18949302  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctcttatt 181  Q
    |||||||||| ||||||||||||| ||||| |   ||||||||| |||||||||||||||||| |||||||||||||||||    
T  18949303 tcatacattggttttatccaataaaaaaataattattgaagagaatgttgaaaagagagtgtctctaacattcctcttatt 18949383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 19953567 - 19953424
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    |||||||||||| |||||| ||||||| ||| ||||||| || || ||||||||| ||| || |||||||||||||||||||||||||||||||||| ||    
T  19953567 acactctctttttaacattttctccaatactcacttttttattggattaaatcatagtgagtctcacactttggaaatgggttccacttaaagtggtggg 19953468  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagaga 144  Q
    |||||||||| ||| ||||||||| | |||||| ||||||||||    
T  19953467 tcatacattggtttcatccaataaaagaatgagtgttgaagaga 19953424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 31494378 - 31494219
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||||||||||||||| ||||   |||||| ||||  | || ||||||||||| ||||||| |||||| |||||||||||||||||||||||| || ||    
T  31494378 acactctcttttcaacactctcctaaacactcacttcattattggcttaaatcaaggtgggtctcacacattggaaatgggttccacttaaagtagtggg 31494279  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgt 162  Q
     ||||||||  ||| ||||||||||| | |||| |||  |||||||||||||||||||||||    
T  31494278 acatacattattttcatccaataagagagtgagtgtt--agagagtgttgaaaagagagtgt 31494219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 6420463 - 6420605
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||||||||||||||| |||||||| |||| ||||| | || ||||||||||||||||||| |||||  |||||||| |||| |||||||| |||| ||    
T  6420463 acactctcttttcaacactctctccaccactcactttcttattggcttaaatcatggtgggtctcaca--ttggaaataggtttcacttaaaatggtggg 6420560  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagag 145  Q
    ||||||||| |||| | ||||||| |||||||| |||||| ||||    
T  6420561 tcatacattaatttcacccaataaaaaaatgagtgttgaaaagag 6420605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 43400305 - 43400146
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||||||||||||||| ||||   |||||| | ||| | || || |||||||| |||||||||||||| |||  ||| |||||||||||||||||| ||    
T  43400305 acactctcttttcaacactctcctaaacactcattttattattggtttaaatcaaggtgggtttcacacattgataataggttccacttaaagtggtggg 43400206  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagt 160  Q
     |||||| |  ||| ||||||||||||| |||| |||  |||||||||||||||||||||    
T  43400205 acatacactagtttcatccaataagaaagtgagtgttagagagagtgttgaaaagagagt 43400146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 75 - 162
Target Start/End: Original strand, 8163542 - 8163629
Alignment:
Q  75 aaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgt 162  Q
    ||||| ||| ||||||||||||| |||||||||||||||||||||||||| |||||||| |||||| |||||||| |||||| |||||    
T  8163542 aaatgagtttcacttaaagtggtgggtcatacattgattttatccaataaaaaaatgagtgttgaaaagagtgttaaaaagatagtgt 8163629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 4024837 - 4024748
Alignment:
Q  25 caacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattt 114  Q
    ||||||||| ||| |||| ||||||||||||||||||| |||||||||| |||||||||||||||||||| || ||||| | ||||||||    
T  4024837 caacacttattttctaattggcttaaatcatggtgggtctcacactttgaaaatgggttccacttaaagttgtgggtcacatattgattt 4024748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 23 - 173
Target Start/End: Complemental strand, 19190782 - 19190630
Alignment:
Q  23 tccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatac--attgattttatcca 120  Q
    ||||||||||||||| | || || |||||||| ||||||| | |||||||  |||||| |||||||||||||||| |  |||||  ||| |||| |||||    
T  19190782 tccaacacttactttctcattggtttaaatcaaggtgggtctaacactttaaaaatggattccacttaaagtggtggaacatacatattaatttcatcca 19190683  T
Q  121 ataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattc 173  Q
    ||||||||||||| |||  |||||||| | ||||||||||||| ||| |||||    
T  19190682 ataagaaaatgagtgttagagagagtgcttaaaagagagtgtctctagcattc 19190630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 37078120 - 37077963
Alignment:
Q  13 caacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgat 112  Q
    ||||| |||||| |||||| ||||  | || || |||||| | ||||||| |||||| |||||||||| |||||||||||||||| || |||||| | ||    
T  37078120 caacactctctcaaacactcacttcattattggtttaaattaaggtgggtctcacacattggaaatggattccacttaaagtggtgggacatacactaat 37078021  T
Q  113 tttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaaca 170  Q
    |  ||||||||||| | || | |||  ||| |||||||||||||||||||||||||||    
T  37078020 tacatccaataagagagtgtgtgttagagaaagtgttgaaaagagagtgtccctaaca 37077963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 20459075 - 20458912
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||||||||||||||| |||||||| |||| ||||| | || ||||| |||| |||||        |||||| |||||||||||||| ||||||||  |    
T  20459075 acactctcttttcaacactctctccaccactcactttcttattggcttgaatcgtggtg--------actttgaaaatgggttccactcaaagtggtgag 20458984  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcc 174  Q
    ||| ||| || ||| ||||||||||| |||||| ||| ||||||||||||  |||||||||||| || ||||||    
T  20458983 tcaaacaatggtttcatccaataagagaatgagtgtttaagagagtgttg--aagagagtgtccttagcattcc 20458912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 35523516 - 35523456
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtggg 61  Q
    ||||||||||||||||||||||||||||| | ||||| ||||  |||||||||||||||||    
T  35523516 acactctcttttcaacattctctccaacattcactttctaatttgcttaaatcatggtggg 35523456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 19954175 - 19954119
Alignment:
Q  102 catacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagaga 158  Q
    ||||||||| ||||||||||||| ||||| || ||||||||||||||| ||||||||    
T  19954175 catacattgtttttatccaataaaaaaataagtgttgaagagagtgtttaaaagaga 19954119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 35523426 - 35523378
Alignment:
Q  130 tgagggttgaagagagtgttgaaaagagagtgtccctaacattcctctt 178  Q
    |||| ||||||||||||||||||||||||||||||||| |||| |||||    
T  35523426 tgagtgttgaagagagtgttgaaaagagagtgtccctagcatttctctt 35523378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 37037352 - 37037424
Alignment:
Q  190 tcactttctttgtaaattcatggttgttccaaaaattgttatataaatagttgtttgaataacacaactcttt 262  Q
    ||||||||||||||| || |||||||| |||||| |||||||| || | ||||||  ||||||||||||||||    
T  37037352 tcactttctttgtaagtttatggttgtaccaaaagttgttataaaattggttgttcaaataacacaactcttt 37037424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 6951953 - 6951995
Alignment:
Q  67 cactttggaaatgggttccacttaaagtggttggtcatacatt 109  Q
    ||||||||||||| ||||||||||||||||||||||| |||||    
T  6951953 cactttggaaatgagttccacttaaagtggttggtcacacatt 6951995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 263
Target Start/End: Complemental strand, 5054117 - 5054056
Alignment:
Q  202 taaattcatggttgttccaaaaattgttatataaatagttgtttgaataacacaactctttc 263  Q
    |||||| ||||||||  ||||| |||| |||||||||||| ||| |||||||||||||||||    
T  5054117 taaatttatggttgtctcaaaagttgtcatataaatagttttttaaataacacaactctttc 5054056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 30706441 - 30706316
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||||||||||||||| |||||| |||||| ||||| |  | || |||||| | ||||||| ||| || ||| ||||| |||||| ||||| ||||  |    
T  30706441 acactctcttttcaacactctctcaaacactcactttattgttggtttaaattaaggtgggtctcatacattgaaaatgagttccatttaaactggtgag 30706342  T
Q  101 tcatacattgattttatccaataaga 126  Q
     |||||||| |||| ||| |||||||    
T  30706341 acatacattaatttcatcaaataaga 30706316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 31859204 - 31859103
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||||||||||||||| | ||| ||||| | ||||| | ||   ||||||| ||||||||||| |||||||||| ||| |||| |||||| ||||| ||    
T  31859204 acactctcttttcaacactatcttcaacagtcactttcttattaacttaaattatggtgggtttgacactttggagatgagttctacttaatgtggtggg 31859105  T
Q  101 tc 102  Q
    ||    
T  31859104 tc 31859103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 177
Target Start/End: Original strand, 41805873 - 41805960
Alignment:
Q  90 aaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctct 177  Q
    |||||||| || ||||||||||||||||||||||| | | |||| ||| |||| |||||  |||| |||||||  ||| |||||||||    
T  41805873 aaagtggtgggacatacattgattttatccaataaaagagtgagtgttaaagaaagtgtccaaaatagagtgttgctagcattcctct 41805960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 43400251 - 43400322
Alignment:
Q  108 ttgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctctta 179  Q
    ||||||| | ||||||| |||||||| ||| | ||||||||||||||||||||||  ||| |||| ||||||    
T  43400251 ttgatttaaaccaataataaaatgagtgtttaggagagtgttgaaaagagagtgttgctagcattactctta 43400322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 3412507 - 3412457
Alignment:
Q  194 tttctttgtaaattcatggttgttccaaaaattgttatataaatagttgtt 244  Q
    |||||||||||||| ||||||||| ||||| |||| | |||||||||||||    
T  3412507 tttctttgtaaatttatggttgtttcaaaagttgtcacataaatagttgtt 3412457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 176
Target Start/End: Original strand, 31395518 - 31395628
Alignment:
Q  66 acactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccc 165  Q
    ||||| |||||||||  ||||| ||||||||  || ||||||||||||| | |||||||   | |||| | | ||||||||| | ||||||||||||  |    
T  31395518 acactatggaaatggaatccacataaagtggagggacatacattgatttcacccaataaaggagtgagtgctaaagagagtgctcaaaagagagtgttgc 31395617  T
Q  166 taacattcctc 176  Q
    |||||||||||    
T  31395618 taacattcctc 31395628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 385035 - 385128
Alignment:
Q  47 ttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaa 140  Q
    |||||||| ||||| | |||||| ||| |||||| |||||||||| ||||| || |||||| |  ||| ||||||||||| | |||| ||||||    
T  385035 ttaaatcaaggtggatctcacacattgaaaatggattccacttaaggtggtgggacatacactagtttcatccaataagagagtgagtgttgaa 385128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 6420516 - 6420463
Alignment:
Q  109 tgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgt 162  Q
    |||||| | ||||||||||| |||| | || |||||||||||||||||||||||    
T  6420516 tgatttaagccaataagaaagtgagtggtggagagagtgttgaaaagagagtgt 6420463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 172
Target Start/End: Complemental strand, 6951953 - 6951924
Alignment:
Q  143 gagtgttgaaaagagagtgtccctaacatt 172  Q
    ||||||||||||||||||||||||||||||    
T  6951953 gagtgttgaaaagagagtgtccctaacatt 6951924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 3804655 - 3804595
Alignment:
Q  102 catacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgt 162  Q
    ||||||||||||| ||||||||| | | |||  ||| ||||||||||||||||| ||||||    
T  3804655 catacattgatttcatccaataaaagagtgaatgttaaagagagtgttgaaaagtgagtgt 3804595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 19193549 - 19193497
Alignment:
Q  124 agaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctc 176  Q
    ||||| |||| |||| |||||||||||||||||||||||  ||| ||||||||    
T  19193549 agaaagtgagtgttggagagagtgttgaaaagagagtgttgctagcattcctc 19193497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 20459031 - 20459075
Alignment:
Q  118 ccaataagaaaatgagggttgaagagagtgttgaaaagagagtgt 162  Q
    ||||||||||| |||| | || |||||||||||||||||||||||    
T  20459031 ccaataagaaagtgagtggtggagagagtgttgaaaagagagtgt 20459075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 35523489 - 35523533
Alignment:
Q  135 gttgaagagagtgttgaaaagagagtgtccctaacattcctctta 179  Q
    |||| ||||| |||||||||||||||||||||| ||||| |||||    
T  35523489 gttggagagaatgttgaaaagagagtgtccctatcattcatctta 35523533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 35589339 - 35589280
Alignment:
Q  194 tttctttgtaaattcatggttgttccaaaaattgttatataaatagttgtttgaataacac 254  Q
    |||||||||||||| |||||||| ||||||||| | |  ||||||||||||| ||||||||    
T  35589339 tttctttgtaaatt-atggttgtcccaaaaattatcaactaaatagttgtttaaataacac 35589280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 42182996 - 42182900
Alignment:
Q  66 acactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgt 162  Q
    |||||||||||||||   |||| ||||||||| || ||||||||||||| | ||||||| | | |||| | |  |||||||| | ||||||||||||    
T  42182996 acactttggaaatggaacccacataaagtggtgggacatacattgatttcacccaataaaagagtgagtgctagagagagtgctcaaaagagagtgt 42182900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 44674649 - 44674589
Alignment:
Q  68 actttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaa 128  Q
    |||||| |||||| |||||| |||||||||  | | ||||||||||| |||||||||||||    
T  44674649 actttgaaaatggattccacataaagtggtaagacctacattgatttcatccaataagaaa 44674589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 45554650 - 45554578
Alignment:
Q  90 aaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgt 162  Q
    |||||||| || ||||||||||||| ||||||||| | | |||| | |  |||||||||||||||| ||||||    
T  45554650 aaagtggtgggacatacattgatttcatccaataaaagagtgagtgctagagagagtgttgaaaagtgagtgt 45554578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 25326985 - 25326827
Alignment:
Q  19 tctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatc 118  Q
    ||||||||||||| ||||||||||  |||||||| |||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25326985 tctctccaacactcactttttaattagcttaaattatggtgggttttgcactttggaaatgggttccacttaaagtggtgggtcatacattgattttatc 25326886  T
Q  119 caataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctct 177  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||    
T  25326885 caataagaaaatgagtgttgaagagagtgttgaaaagagagtgtccctatcattactct 25326827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 26159520 - 26159362
Alignment:
Q  19 tctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatc 118  Q
    ||||||||||||| ||||||||||  |||||||| |||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26159520 tctctccaacactcactttttaattagcttaaattatggtgggttttgcactttggaaatgggttccacttaaagtggtgggtcatacattgattttatc 26159421  T
Q  119 caataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctct 177  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||    
T  26159420 caataagaaaatgagtgttgaagagagtgttgaaaagagagtgtccctatcattactct 26159362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 26170911 - 26171046
Alignment:
Q  13 caacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgat 112  Q
    ||||| ||||||||||||| |||||||||  | ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26170911 caacactctctccaacactcactttttaactgacttaaattatggtgggtttcacactttggaaatgggttccacttaaagtggtgggtcatacattgat 26171010  T
Q  113 tttatccaataagaaaatgagggttgaagagagtgt 148  Q
    ||||||||||||||||||||| |||||| |||||||    
T  26171011 tttatccaataagaaaatgagtgttgaaaagagtgt 26171046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 6163527 - 6163703
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||||||||||||| |||||||| |||||| |||||||||| |||||||||||| ||| || |||||||||||||||| |||| |||||||||||| ||    
T  6163527 acactctcttttcaatattctctctaacactcactttttaattggcttaaatcatagtgcgtctcacactttggaaatgagttctacttaaagtggtggg 6163626  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctct 177  Q
    ||| |||||| ||| | ||||| | |||||||| || ||| | ||| ||||||||||||||||| ||| ||| ||||    
T  6163627 tcaaacattggtttaagccaattaaaaaatgagtgtagaaaaaagtcttgaaaagagagtgtccttaatatttctct 6163703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 3 - 176
Target Start/End: Complemental strand, 12690422 - 12690249
Alignment:
Q  3 actctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtc 102  Q
    |||||||||||||||| ||||| ||||||  |||  | || || |||||||| ||||||| ||||||||||||||| | ||||||||||||||||  | |    
T  12690422 actctcttttcaacatcctctcaaacactctcttccttattggtttaaatcaaggtgggtctcacactttggaaatagattccacttaaagtggtgagac 12690323  T
Q  103 atacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctc 176  Q
    || |||| |||| ||||||||| | |   || |||  |||||||||| |||| |||||||||||| ||||||||    
T  12690322 atgcattaatttcatccaataaaagagcaagtgttagagagagtgtttaaaatagagtgtccctagcattcctc 12690249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 29610245 - 29610422
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    |||||| |||||||||| |||||| |||||| ||||  |  | || |||||| |  |||||| |||||| || ||||| |||||||||||||||||| ||    
T  29610245 acactcacttttcaacactctctcaaacactcacttgattgttggtttaaatgaatgtgggtctcacacattagaaattggttccacttaaagtggtggg 29610344  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctctt 178  Q
     |||||||| |||| | | |||||| || |||| |||  ||||||||||||||||||||||||  || ||||||||||    
T  29610345 acatacattcatttaaactaataagcaagtgagtgtttgagagagtgttgaaaagagagtgtcattagcattcctctt 29610422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 5106381 - 5106309
Alignment:
Q  90 aaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgt 162  Q
    |||||||| || ||||||||||||||||||||||| ||| |||| |||  ||| |||||||||||| ||||||    
T  5106381 aaagtggtgggacatacattgattttatccaataaaaaagtgagtgttagagaaagtgttgaaaagtgagtgt 5106309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 173
Target Start/End: Original strand, 31947261 - 31947387
Alignment:
Q  47 ttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagt 146  Q
    |||||||||| ||||  ||| |||||| ||||| || ||| ||||| ||||  || |||||||  ||| ||||||||||| |||||  || ||||| |||    
T  31947261 ttaaatcatgatgggcctcatactttgaaaatgagtaccatttaaaatggtgagttatacatttgtttcatccaataagagaatgaacgtcgaagaaagt 31947360  T
Q  147 gttgaaaagagagtgtccctaacattc 173  Q
    |||||||||| ||||||| || |||||    
T  31947361 gttgaaaagatagtgtccttagcattc 31947387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 26595456 - 26595535
Alignment:
Q  183 caatacgtcactttctttgtaaattcatggttgttccaaaaattgttatataaatagttgtttgaataacacaactcttt 262  Q
    |||||| ||| |||||||||||| |  |||||||| ||||| |||| |||||||| | ||||  ||||||||||||||||    
T  26595456 caatacctcattttctttgtaaaattttggttgtttcaaaagttgtcatataaatggatgttcaaataacacaactcttt 26595535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 10432182 - 10432144
Alignment:
Q  140 agagagtgttgaaaagagagtgtccctaacattcctctt 178  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  10432182 agagagtgttgaaaagagagtgtccttgacattcctctt 10432144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 34905419 - 34905355
Alignment:
Q  90 aaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaa 154  Q
    |||||||| || ||||||||||||| ||||||||| | | |||| |||  |||||||||||||||    
T  34905419 aaagtggtgggacatacattgatttcatccaataaaagagtgagtgttagagagagtgttgaaaa 34905355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 18473821 - 18473650
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||||||||||||||| ||||| ||||||| ||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||  ||    
T  18473821 acactctcttttcaacactctcttcaacactcactttctaattggcttaaatcatggtgggtctcacactttgaaaatgggttccacttaaagtggcggg 18473722  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacatt 172  Q
    ||| | |||| ||| |  |||| ||||| |||| ||||||||||||||||||||||||||||| ||| ||||    
T  18473721 tcacatattggtttaagtcaattagaaagtgagtgttgaagagagtgttgaaaagagagtgtctctagcatt 18473650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 18157208 - 18157039
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    |||||||||||||||||||||||| || ||| ||||  | || || |||| ||| | ||||| |||||||||||||||| ||||||||||||||||| ||    
T  18157208 acactctcttttcaacattctctcaaatactcacttccttattggtttaa-tcaag-tgggtctcacactttggaaatgtgttccacttaaagtggtggg 18157111  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacatt 172  Q
     |||||||| |||| ||||||||| ||| || | |||  |||||||||||||||||||||||||||| ||||    
T  18157110 acatacattaatttcatccaataaaaaagtgggtgttagagagagtgttgaaaagagagtgtccctagcatt 18157039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 28274958 - 28274792
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||||||||||||||| |||||  |||||  ||||| | || || |||||||| ||||||| |||||| ||||||||||||||||||||| ||| | ||    
T  28274958 acactctcttttcaacactctcttaaacacccactttattattggtttaaatcaaggtgggtctcacacattggaaatgggttccacttaaggtgatggg 28274859  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtcccta 167  Q
     |||||| |  ||| ||||||||||| | |||| |||  ||||||||||||||||||||||||||||    
T  28274858 acatacactagtttcatccaataagagagtgagtgttagagagagtgttgaaaagagagtgtcccta 28274792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 45 - 176
Target Start/End: Original strand, 18953217 - 18953347
Alignment:
Q  45 gcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagaga 144  Q
    |||||||||||||||| | ||||||||| |||| |||||||||| ||| |||| | |||||||||| ||| ||||||||| |||||||| |||||||| |    
T  18953217 gcttaaatcatggtggatctcacactttagaaacgggttccactaaaa-tggtggatcatacattggtttcatccaataaaaaaatgagtgttgaagaaa 18953315  T
Q  145 gtgttgaaaagagagtgtccctaacattcctc 176  Q
    || ||||| ||| |||||||||||||||||||    
T  18953316 gtcttgaagagatagtgtccctaacattcctc 18953347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 7549734 - 7549634
Alignment:
Q  25 caacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaa-tgggttccacttaaagtggttggtcatacattgattttatccaata 123  Q
    ||||||| |||||||||| ||||||||| |||||| || |||||||||||||| || |||||||||||||||||||||||||||||  ||||||||||||    
T  7549734 caacactcactttttaattggcttaaattatggtgagtctcacactttggaaaatgtgttccacttaaagtggttggtcatacattagttttatccaata 7549635  T
Q  124 a 124  Q
    |    
T  7549634 a 7549634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 40125857 - 40126022
Alignment:
Q  7 tcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatac 106  Q
    ||||||||||| ||||||||||| | ||||| |||| | ||||||| |||||     ||||||||||||||||| |||||||||||||||| ||||||||    
T  40125857 tcttttcaacactctctccaacattcactttctaattgacttaaattatggtc----tcacactttggaaatggattccacttaaagtggtgggtcatac 40125952  T
Q  107 attgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctc 176  Q
    |||  ||||||||||||| ||||| |  ||| |||| || ||| |||| | ||||||| |||||||||||    
T  40125953 attagttttatccaataaaaaaataaatgttaaagaaagcgttaaaaaaatagtgtccttaacattcctc 40126022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 145
Target Start/End: Complemental strand, 11247918 - 11247798
Alignment:
Q  25 caacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataa 124  Q
    ||||||| | |||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||| |||| | ||| |||||| ||| | ||||| |    
T  11247918 caacactcattttttaattggcttaaatcatggtgggtctcacactttgaaaatgggttccacttaaaatggtggatcacacattggtttaagccaatta 11247819  T
Q  125 gaaaatgagggttgaagagag 145  Q
     ||| ||||||||||| ||||    
T  11247818 aaaagtgagggttgaaaagag 11247798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 25010152 - 25010005
Alignment:
Q  13 caacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgat 112  Q
    ||||| ||||||||||||| | ||||| || ||||||||| || |||| | ||||||||| ||||||||||||| | ||| | || ||| ||||| || |    
T  25010152 caacactctctccaacactcatttttttattggcttaaattatagtgg-tctcacactttagaaatgggttccattcaaaatagtaggtaatacaatggt 25010054  T
Q  113 tttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtg 161  Q
    || ||||||||||| |||||| |||||||  ||||||||||||||||||    
T  25010053 ttcatccaataagagaatgagtgttgaaggaagtgttgaaaagagagtg 25010005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 177
Target Start/End: Complemental strand, 21977334 - 21977183
Alignment:
Q  26 aacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataag 125  Q
    |||||| ||||| | || || |||||||| | | ||| |||||| |||||||||||||||||||||||| || || ||||||||  ||| ||| ||||||    
T  21977334 aacactcactttattattggtttaaatcaagataggtctcacacattggaaatgggttccacttaaagtagtgggacatacattagtttcatcaaataag 21977235  T
Q  126 aaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctct 177  Q
    ||| ||||  ||  ||||||||||||||||||| |||||||| |||| ||||    
T  21977234 aaagtgagttttagagagagtgttgaaaagagaatgtccctagcattactct 21977183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 172
Target Start/End: Original strand, 14340999 - 14341100
Alignment:
Q  71 ttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaaca 170  Q
    ||||||||||||||||||||||||||| || |||| |||  ||| ||||||||| |||||||| |||  ||||||||||||||||| ||||||  |||||    
T  14340999 ttggaaatgggttccacttaaagtggtgggacatatattagtttcatccaataaaaaaatgagtgttagagagagtgttgaaaagaaagtgtcattaaca 14341098  T
Q  171 tt 172  Q
    ||    
T  14341099 tt 14341100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 15741860 - 15741960
Alignment:
Q  45 gcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagaga 144  Q
    ||||||||||| | |||| |||||||||||||||| ||| ||||||||||| | | |||||||||| ||||||||||||||  |||||| |||||| |||    
T  15741860 gcttaaatcatagcgggtctcacactttggaaatgagtttcacttaaagtgatcgatcatacattggttttatccaataagttaatgagtgttgaaaaga 15741959  T
Q  145 g 145  Q
    |    
T  15741960 g 15741960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 1468566 - 1468443
Alignment:
Q  47 ttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagt 146  Q
    |||||||| ||||||| |||||| |||||||| |||||||||||||||| |    |||||| |  ||| ||||||||||| | |||| |||  |||||||    
T  1468566 ttaaatcaaggtgggtctcacacattggaaataggttccacttaaagtgatgaaacatacactagtttaatccaataagagagtgagtgtt--agagagt 1468469  T
Q  147 gttgaaaagagagtgtccctaacatt 172  Q
    ||||||| ||||||||||||| ||||    
T  1468468 gttgaaatgagagtgtccctagcatt 1468443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 33234544 - 33234470
Alignment:
Q  35 tttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacatt 109  Q
    |||||||| ||||||||| ||||||| | ||||||||| |||||||||| |||||||||||||  ||||||||||    
T  33234544 tttttaattggcttaaattatggtggatctcacactttagaaatgggtttcacttaaagtggtgagtcatacatt 33234470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 13114678 - 13114855
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||||||||||  ||| |||||| |||||| ||| | | || || ||||||||  |||||||  ||| |||||||||||  ||||  ||||||||| ||    
T  13114678 acactctcttttggacactctctctaacactcactatctcattgggttaaatcaatgtgggttatacattttggaaatggaatccatataaagtggtggg 13114777  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctctt 178  Q
     |||| |||||||||||| ||||| | | |||| |||  |||||||||  ||||||||||||| ||| |||| |||||    
T  13114778 acatatattgattttatctaataaaagagtgagtgttagagagagtgtccaaaagagagtgtcgctagcatttctctt 13114855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 46793049 - 46792945
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||| ||||||||||| ||| |  |||||||||||||| || ||||||||||||||||||| ||||||||  |||||| ||||   | |||||||| ||    
T  46793049 acactatcttttcaacactctttttaacacttacttttttattggcttaaatcatggtgggtctcacacttcagaaatgagttcagttcaaagtggtggg 46792950  T
Q  101 tcata 105  Q
    |||||    
T  46792949 tcata 46792945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 176
Target Start/End: Original strand, 5602624 - 5602742
Alignment:
Q  57 gtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaaga 156  Q
    |||||| |||||||||||||||  ||| ||||||||||||| || |||| ||| |||| ||||||||||| | | || |||  ||| ||| || |||| |    
T  5602624 gtgggtctcacactttggaaataagtttcacttaaagtggtgggacatatattaatttcatccaataagagagtaagtgttagagaaagtatt-aaaaaa 5602722  T
Q  157 gagtgtccctaacattcctc 176  Q
    ||||||||||||||||||||    
T  5602723 gagtgtccctaacattcctc 5602742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 177
Target Start/End: Original strand, 14094074 - 14094185
Alignment:
Q  66 acactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccc 165  Q
    |||||||||||||||   |||| ||||||||| || ||||||||||||| | ||||||| ||| |||| | || |||||||||| |||||| | |||| |    
T  14094074 acactttggaaatggaacccacataaagtggtgggacatacattgatttcacccaataaaaaagtgagtgctggagagagtgttcaaaagataatgtcgc 14094173  T
Q  166 taacattcctct 177  Q
    || |||||||||    
T  14094174 tagcattcctct 14094185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 4817180 - 4817257
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatg 79  Q
    |||||||||||| |||||||||||||||||||| ||||| || |||||||||  |||||| | |||||||||| |||||    
T  4817180 acactctctttttaacattctctccaacactta-ttttttattggcttaaattgtggtggatctcacactttgaaaatg 4817257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 18473768 - 18473824
Alignment:
Q  109 tgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccc 165  Q
    |||||| | ||||| ||||| |||| |||||||||||||||||||||||||||||||    
T  18473768 tgatttaagccaattagaaagtgagtgttgaagagagtgttgaaaagagagtgtccc 18473824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 21970286 - 21970430
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    |||||||||||| |||||||||   || ||| ||||  | || || |||||||| | ||||| |||||| ||| ||||||||||||||||||||||| ||    
T  21970286 acactctcttttaaacattctcataaatactcacttcattattggtttaaatcaagatgggtctcacacattgaaaatgggttccacttaaagtggtggg 21970385  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagag 145  Q
     |||||| |  ||| || |||||||| | |||| |||||| ||||    
T  21970386 acatacactagtttcattcaataagagagtgagtgttgaaaagag 21970430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 7548791 - 7548747
Alignment:
Q  118 ccaataagaaaatgagggttgaagagagtgttgaaaagagagtgt 162  Q
    ||||||||| |||||| ||||||||| ||||||||||||||||||    
T  7548791 ccaataagagaatgagtgttgaagagggtgttgaaaagagagtgt 7548747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 33234050 - 33233986
Alignment:
Q  112 ttttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctc 176  Q
    |||||||||||||   |||||| ||| |||||||||||||||||||||||||  || ||||||||    
T  33234050 ttttatccaataaacgaatgagtgtttaagagagtgttgaaaagagagtgtctatagcattcctc 33233986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 2593031 - 2592965
Alignment:
Q  46 cttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgat 112  Q
    ||||||| | ||||||| |||||||||  |||||| ||||||||||||||||  |||||||| ||||    
T  2593031 cttaaataaaggtgggtctcacactttaaaaatggattccacttaaagtggtgagtcatacactgat 2592965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 176
Target Start/End: Complemental strand, 11135846 - 11135736
Alignment:
Q  66 acactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccc 165  Q
    |||||||||||||||   |||| ||||||||| || ||||||||||||| | ||||||| | | |||| | |  |||||||| | ||||||||||||  |    
T  11135846 acactttggaaatggaacccacataaagtggtgggacatacattgatttcacccaataaaatagtgagtgctagagagagtgctcaaaagagagtgttgc 11135747  T
Q  166 taacattcctc 176  Q
    || ||||||||    
T  11135746 tagcattcctc 11135736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 39150047 - 39150112
Alignment:
Q  33 actttttaatcggcttaaatcatggtgggtttcacac-tttggaaatgggttccacttaaagtggt 97  Q
    |||||||| | |||||||||||| ||| || |||||| ||||||||||  ||||||||||||||||    
T  39150047 actttttatttggcttaaatcatagtgtgtctcacacttttggaaatgcattccacttaaagtggt 39150112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 13388403 - 13388331
Alignment:
Q  104 tacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctc 176  Q
    ||||||||||| ||||||||| ||| |||| |||  ||||||| || ||||||||||||  ||| ||||||||    
T  13388403 tacattgatttcatccaataaaaaagtgagtgttagagagagtattcaaaagagagtgttgctagcattcctc 13388331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 32848656 - 32848752
Alignment:
Q  66 acactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgt 162  Q
    |||||||| ||||||  ||||| ||||||||| || |||||| |||||| | ||||||| | | |||| | |  |||||||||| ||||||||||||    
T  32848656 acactttgaaaatggaatccacataaagtggtgggacatacaatgatttcacccaataaaagagtgagtgctagagagagtgttcaaaagagagtgt 32848752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 2911933 - 2911755
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||| ||||||||||| ||||||||| ||| ||||||| || ||||||||||||||||| | ||||||||| ||||| |||||||||||||||| |  |    
T  2911933 acactttcttttcaacactctctccaatactcacttttttattggcttaaatcatggtggatctcacactttagaaataggttccacttaaagtgatgag 2911834  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctctta 179  Q
    ||||||||| ||| ||| |||||||| |||||| |||||||| |||||||||||||||||||| || |||||| |||||    
T  2911833 tcatacattaattatattcaataagagaatgagtgttgaagatagtgttgaaaagagagtgtctctgacattcttctta 2911755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 6 - 179
Target Start/End: Complemental strand, 23434860 - 23434690
Alignment:
Q  6 ctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcata 105  Q
    ||||||||||||  ||||| || ||| ||||||| || ||||||||| ||||||||| ||||||||| |||||| |||| |||||||||||| | |||||    
T  23434860 ctcttttcaaca--ctctcaaatactcacttttttattggcttaaattatggtgggtctcacactttagaaatgtgttc-acttaaagtggtggatcata 23434764  T
Q  106 cattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctctta 179  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||||||||  ||||||||||| ||||| |||||    
T  23434763 cattggttttatccaataagagaatgagtgttgaagagagtgttgaaaaaggagtgtccctagcattcttctta 23434690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 25 - 156
Target Start/End: Original strand, 24845462 - 24845593
Alignment:
Q  25 caacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataa 124  Q
    ||||||| ||||| |||| |||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||| |||||| ||| | ||||| |    
T  24845462 caacactcactttctaattggcttaaatcatggtgagtctcacactttggaaatgggttccacttaaagtggtgggtcacacattggtttaagccaatta 24845561  T
Q  125 gaaaatgagggttgaagagagtgttgaaaaga 156  Q
    |||| |||  ||||||||||| ||||||||||    
T  24845562 gaaagtgaatgttgaagagagggttgaaaaga 24845593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 46994371 - 46994502
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    |||||||||||| |||  |||||| |||||| ||||||| || ||||||||||||||||||| ||||||||||||||||| |  ||||||||||||| ||    
T  46994371 acactctctttttaacgctctctctaacactcacttttttattggcttaaatcatggtgggtctcacactttggaaatggatatcacttaaagtggtggg 46994470  T
Q  101 tcatacattgattttatccaataagaaaatga 132  Q
    |||||||||||||| ||| ||||| |||||||    
T  46994471 tcatacattgatttcatctaataaaaaaatga 46994502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 145
Target Start/End: Complemental strand, 44350303 - 44350183
Alignment:
Q  25 caacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataa 124  Q
    ||||||| ||||| |||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||| |||||| ||| | ||||| |    
T  44350303 caacactcactttctaattggcttaaatcatggtgggtctcacactttggaaatggattccacttaaaatggtgggtcacacattggtttaagccaatta 44350204  T
Q  125 gaaaatgagggttgaagagag 145  Q
    |||| ||||||||||| ||||    
T  44350203 gaaagtgagggttgaaaagag 44350183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 2 - 176
Target Start/End: Original strand, 4089988 - 4090160
Alignment:
Q  2 cactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggt 101  Q
    |||| |||||| |||||||||||||||||| ||||||| ||  ||| ||||||||||| || ||||||||| ||||||||| ||||  |||||| | |||    
T  4089988 cactttctttttaacattctctccaacactcacttttttataagctaaaatcatggtgagtctcacactttagaaatgggtaccac--aaagtgatgggt 4090085  T
Q  102 catacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctc 176  Q
    |||| |||||||| ||||||||| ||||| || ||| |||||| ||||||||| ||| || || || ||||||||    
T  4090086 catagattgatttcatccaataaaaaaataagtgttaaagagaatgttgaaaaaagaatgcccttagcattcctc 4090160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 20954851 - 20954722
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||||||||||||||| |||||| |||||| ||||||| || |||||||||||||||| || ||||||||| |||||| |||||| | ||||| || ||    
T  20954851 acactctcttttcaacactctctcaaacactcacttttttattggcttaaatcatggtgagtctcacactttagaaatgagttccattcaaagtagtggg 20954752  T
Q  101 tcatacattgattttatccaataagaaaat 130  Q
    | ||||||| |||| | | |||||||||||    
T  20954751 ttatacattaatttcaccgaataagaaaat 20954722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 37490074 - 37489902
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||||||||||||||| |||||| |||||| ||||  | || || |||||| | ||| ||| |||||||||||| ||| |||||||||||  |||| ||    
T  37490074 acactctcttttcaacactctctcaaacactcacttacttattggtttaaatgaaggtcggtctcacactttggagatgagttccacttaatatggtggg 37489975  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattc 173  Q
     |||||||| |||| | |||||||  || |||| |||  ||||| ||||||||||||||||||| || |||||    
T  37489974 acatacattcatttaaaccaataaacaagtgagtgtttgagagaatgttgaaaagagagtgtccttagcattc 37489902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 25003520 - 25003360
Alignment:
Q  13 caacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgat 112  Q
    ||||| ||||| ||||||| ||||||| || ||||||||| ||| ||||| ||||||||||||||||  ||||| | ||| |||| | ||||||| |  |    
T  25003520 caacactctctgcaacactcacttttttattggcttaaattatgatgggtctcacactttggaaatgacttccattcaaaatggtggctcatacaatagt 25003421  T
Q  113 tttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattc 173  Q
    || | ||||||| ||||| || ||||||   |||| | |||||||||||||| ||||||||    
T  25003420 ttcacccaataaaaaaataagtgttgaaattagtgctaaaaagagagtgtccttaacattc 25003360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 29462076 - 29462152
Alignment:
Q  67 cactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagag 143  Q
    ||||||||||||| |||||||||||||| ||  |||||||||||||||||| |||||| | |||||| |||||||||    
T  29462076 cactttggaaatgtgttccacttaaagtagtgagtcatacattgattttattcaataaaagaatgagtgttgaagag 29462152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 24539131 - 24539309
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||||||||||  ||| |||||| |||||| ||| | | || || ||||||||  ||||||   ||| |||||||||||  ||||  ||||||||| ||    
T  24539131 acactctcttttggacactctctctaacactcactctctcattgggttaaatcaatgtgggtcatacattttggaaatggaatccatataaagtggtggg 24539230  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctctta 179  Q
     |||| |||||||||||||||||| | | |||| |||  |||||||||  ||||||||||||| ||| |||| ||||||    
T  24539231 acatatattgattttatccaataaaagagtgagtgttagagagagtgtccaaaagagagtgtcgctagcatttctctta 24539309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 39523701 - 39523576
Alignment:
Q  47 ttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagt 146  Q
    |||||||| ||||| | |||||  |||||||||||||||||||||||||||  | |||||  |  ||| ||||||||| | |||||| |||  | |||||    
T  39523701 ttaaatcaaggtggatctcacatattggaaatgggttccacttaaagtggtgagacataccctagtttcatccaataaaagaatgagtgttagacagagt 39523602  T
Q  147 gttgaaaagagagtgtccctaacatt 172  Q
    ||||||||||||| ||||||| ||||    
T  39523601 gttgaaaagagagcgtccctatcatt 39523576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 37629857 - 37629986
Alignment:
Q  7 tcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatac 106  Q
    ||||||||| ||||| | ||||||||||||||||||   || ||||||| |||||| |  ||||||  ||||| |||| |||||||    | | |||||     
T  37629857 tcttttcaatattcttttcaacacttactttttaattcactcaaatcatagtgggtcttgcactttaaaaatgagttctacttaaa----tggatcataa 37629952  T
Q  107 attgattttatccaataagaaaatgagggttgaa 140  Q
    ||||||||||||||||||||||||||| ||||||    
T  37629953 attgattttatccaataagaaaatgagtgttgaa 37629986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 178
Target Start/End: Original strand, 35198697 - 35198831
Alignment:
Q  44 ggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagag 143  Q
    ||||||||| | |||| |||| |||  |||||||||||||||| | |||||||||| |||||||||  |||  || ||||||| | |||| |||  ||||    
T  35198697 ggcttaaattaaggtgagtttgacatattggaaatgggttccattaaaagtggttgatcatacattagtttcttcaaataagagagtgagtgttagagag 35198796  T
Q  144 agtgttgaaaagagagtgtccctaacattcctctt 178  Q
    | ||||||||| ||| |||||||| |||| |||||    
T  35198797 aatgttgaaaaaagaatgtccctagcattactctt 35198831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 35549658 - 35549824
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||||||||||||||| |||||| | |||| |  |||| || ||||||  ||||||||| |  ||  ||||| |||||||||||||  ||| |||| |     
T  35549658 acactctcttttcaacactctctctaccactcatctttttattggcttatttcatggtggatcccatgctttgaaaatgggttccacaaaaaatggtgga 35549757  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtcccta 167  Q
    || ||||||| ||| ||||||||| |  || || ||| | | |||||||||||||||||||||||||    
T  35549758 tcctacattggtttcatccaataaaaggataagtgttaaggggagtgttgaaaagagagtgtcccta 35549824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 75 - 176
Target Start/End: Original strand, 38065400 - 38065499
Alignment:
Q  75 aaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcc 174  Q
    ||||||||||||||||||||||| ||  ||||||| |||| ||||||||| ||| | || |||  | ||||| |||||||||||||||||| |||| |||    
T  38065400 aaatgggttccacttaaagtggtgggagatacattaatttcatccaataaaaaagttagtgtt--aaagagtattgaaaagagagtgtcccgaacaatcc 38065497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 177
Target Start/End: Original strand, 17354600 - 17354711
Alignment:
Q  66 acactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccc 165  Q
    ||||||||||||| |   |||| ||||||||| || ||||||||||||| ||||||||| | |||||| |||  |||||||| | |||| |||||||  |    
T  17354600 acactttggaaatagaacccacataaagtggtgggacatacattgatttcatccaataaaagaatgagtgttagagagagtgctcaaaaaagagtgttgc 17354699  T
Q  166 taacattcctct 177  Q
    || |||||||||    
T  17354700 tagcattcctct 17354711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 17749866 - 17749689
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||||||||||  ||| |||||| |||||| ||| | | || || ||||||||  ||||||   ||| ||||||||||   ||||  ||||||||| ||    
T  17749866 acactctcttttggacactctctctaacactcactctctcattgggttaaatcaatgtgggtcatacattttggaaatgaaatccatataaagtggtggg 17749767  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctctt 178  Q
     |||| |||||||||||||||||| | | |||| |||  |||||||||  |||| |||||||| ||| |||| |||||    
T  17749766 acatatattgattttatccaataaaagagtgagtgttagagagagtgtccaaaaaagagtgtcgctagcatttctctt 17749689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 32721014 - 32721067
Alignment:
Q  80 ggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgag 133  Q
    ||||||||||||| || | |||||||||||||||||||||||||| | ||||||    
T  32721014 ggttccacttaaattgatgggtcatacattgattttatccaataaaagaatgag 32721067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 33852548 - 33852621
Alignment:
Q  71 ttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagaga 144  Q
    |||||||||| |||||||||||||||| || |||||| | |||| ||| ||||||| |||||| ||| ||||||    
T  33852548 ttggaaatggattccacttaaagtggtgggacatacactaatttcatctaataagagaatgagtgttaaagaga 33852621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 37490030 - 37490087
Alignment:
Q  118 ccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcct 175  Q
    |||||||| || |||| |||  ||||||||||||||||||||||||| ||||||||||    
T  37490030 ccaataagtaagtgagtgtttgagagagtgttgaaaagagagtgtccttaacattcct 37490087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 179
Target Start/End: Complemental strand, 2520698 - 2520627
Alignment:
Q  108 ttgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctctta 179  Q
    ||||||| | ||||||| | | |||| |||| ||||||||||||||||||||||| |||| || ||||||||    
T  2520698 ttgatttcacccaataaaagagtgagtgttggagagagtgttgaaaagagagtgttcctagcactcctctta 2520627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 176
Target Start/End: Complemental strand, 24845469 - 24845436
Alignment:
Q  143 gagtgttgaaaagagagtgtccctaacattcctc 176  Q
    |||||||||||||||||||||| |||||||||||    
T  24845469 gagtgttgaaaagagagtgtccgtaacattcctc 24845436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 25590569 - 25590492
Alignment:
Q  100 gtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctct 177  Q
    |||||||||| |||||||||||||| ||||| || || |||||| | ||| |||| |||||||  ||| |||||||||    
T  25590569 gtcatacattaattttatccaataaaaaaataagtgtcgaagagggcgttaaaaaaagagtgtatctatcattcctct 25590492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 27888453 - 27888277
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    |||||||||||| | || |||||| |||||| ||| | | || || ||||||||| |||||| | |||||||  |||| |   ||||  |||||||| ||    
T  27888453 acactctcttttgagcactctctctaacactcactctcttattggtttaaatcattgtgggtct-acactttaaaaattgaacccacacaaagtggtggg 27888355  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctctt 178  Q
     ||||||||||||||||||||| |||   |||| |||  |||||||| | ||||| ||||||  ||| ||||||||||    
T  27888354 acatacattgattttatccaatgagagggtgagtgttagagagagtgctcaaaagtgagtgttgctagcattcctctt 27888277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 3676368 - 3676316
Alignment:
Q  88 ttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaa 140  Q
    ||||| |||| |||||| ||||||||| |||| ||||||||||||| ||||||    
T  3676368 ttaaaatggtgggtcatgcattgatttcatccgataagaaaatgagtgttgaa 3676316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 40417881 - 40417957
Alignment:
Q  183 caatacgtcactttctttgtaaattcatggttgttccaaaaattgttatataaatagttgtttgaataacacaactc 259  Q
    |||||| |||||||||||||||| |  |||||||  ||||| ||||  ||||||||| ||||  |||||||||||||    
T  40417881 caatacctcactttctttgtaaaattttggttgtctcaaaagttgtcgtataaatagatgttcaaataacacaactc 40417957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 7791982 - 7791823
Alignment:
Q  19 tctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatc 118  Q
    ||||||||||||| ||||| |||| |||||||||||  |||||| ||||||||||||||| | |||||||||||||||| ||||| |||||| ||| | |    
T  7791982 tctctccaacactcactttctaattggcttaaatcacagtgggtctcacactttggaaatagattccacttaaagtggtgggtcacacattggtttaagc 7791883  T
Q  119 caataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctctt 178  Q
    |||| ||||| |||| |||||||| ||||||||||||||||||||||||||||| |||||    
T  7791882 caattagaaagtgagcgttgaagaaagtgttgaaaagagagtgtccctaacatttctctt 7791823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 44 - 174
Target Start/End: Original strand, 22813323 - 22813453
Alignment:
Q  44 ggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagag 143  Q
    |||||||||||||||| || ||||||||| ||||||||||||||| |||||||| ||||||||||||  || ||||||| |||||||||| ||| |||||    
T  22813323 ggcttaaatcatggtgagtctcacactttcgaaatgggttccactaaaagtggtgggtcatacattgcattcatccaatgagaaaatgagtgttcaagag 22813422  T
Q  144 agtgttgaaaagagagtgtccctaacattcc 174  Q
    |||||| |||||||||| |||||||||||||    
T  22813423 agtgttaaaaagagagtctccctaacattcc 22813453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 10798285 - 10798438
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    |||||| |||||||||| ||| | ||||| |||||||||||| ||||||||| || |||||| ||| |||||||||||| ||||||||||||||||| ||    
T  10798285 acactcacttttcaacactcttttcaacatttactttttaattggcttaaattattgtgggtctcatactttggaaatgagttccacttaaagtggtggg 10798384  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaa 154  Q
    |||||||||| |||||||||||| || ||||||  || || |||||||||||||    
T  10798385 tcatacattggttttatccaatacgagaatgagtcttaaaaagagtgttgaaaa 10798438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 49720010 - 49720185
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||| |||||||||| ||||||| |||||| ||||  | ||  | |||||| | ||||||| ||||||||||||||||||||||||||||| |||| ||    
T  49720010 acactttcttttcaacgttctctcaaacactcacttgcttattagtttaaatgaaggtgggtctcacactttggaaatgggttccacttaaaatggtggg 49720109  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctc 176  Q
      ||||||| |||| |||||||||| || |||| |||  |||||||||||||||| |||||||| || ||||||||    
T  49720110 atatacattcatttaatccaataagcaagtgagtgtttgagagagtgttgaaaagtgagtgtccttagcattcctc 49720185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 214194 - 214045
Alignment:
Q  13 caacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgat 112  Q
    ||||| ||||| ||||||| |||||||||| |  |||||  ||| ||||| |||||||||||||| ||  |||| |||||||||| ||||||| |||| |    
T  214194 caacactctcttcaacactcactttttaattgatttaaaatatgatgggtctcacactttggaaagggactccatttaaagtggtgggtcatatattggt 214095  T
Q  113 tttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtc 163  Q
    || ||||||||||| |||||| |||||||||||||||||||||||||||||    
T  214094 tt-atccaataagagaatgagtgttgaagagagtgttgaaaagagagtgtc 214045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 7640603 - 7640780
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||||||||||||||| |||| | |||||| ||||  | || || || ||||| |||| || |||||||| |||||| |||||||||||| ||||| ||    
T  7640603 acactctcttttcaacactctcacaaacactcacttccttattggtttcaatcaaggtgagtctcacacttaggaaataggttccacttaatgtggtagg 7640702  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctctt 178  Q
     |||||||| |||| |||||||||||||   || |||  || ||||||||||||||||||||||||| ||||||||||    
T  7640703 acatacattaatttcatccaataagaaagcaagtgttagagtgagtgttgaaaagagagtgtccctagcattcctctt 7640780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 44911635 - 44911760
Alignment:
Q  23 tccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaat 122  Q
    ||||||||| |||||||||| ||||||||||||||||||| ||| ||||| |||||  |||||||||||| ||||  |||||| ||||||||||||||||    
T  44911635 tccaacactcactttttaattggcttaaatcatggtgggtctcatactttagaaatatgttccacttaaattggtgtgtcatatattgattttatccaat 44911734  T
Q  123 aagaaaatgagggttgaagagagtgt 148  Q
    || ||||| || ||| ||||||||||    
T  44911735 aaaaaaataagtgttaaagagagtgt 44911760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 53655419 - 53655564
Alignment:
Q  5 tctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcat 104  Q
    ||||||||||||| ||||||||||||| ||||| |||| |||||||||||| || | | |||||||||| |||||||||||||||||| |||| |||||     
T  53655419 tctcttttcaacactctctccaacactcactttctaattggcttaaatcatagttgatctcacactttgaaaatgggttccacttaaaatggtgggtcac 53655518  T
Q  105 acattgattttatccaa-taagaaaatgagggttgaagagagtgtt 149  Q
    |||||| ||| | |||| ||| ||| |||| |||||||||||||||    
T  53655519 acattggtttaagccaattaaaaaagtgagtgttgaagagagtgtt 53655564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 34706590 - 34706734
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    |||||||||||| |||| | ||||||||||  ||||| ||||  |||||||||||||||| | |||||||||||||||||||||| ||||||||||| ||    
T  34706590 acactctcttttgaacactatctccaacacccactttctaatttgcttaaatcatggtggatctcacactttggaaatgggttccgcttaaagtggtggg 34706689  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagag 145  Q
    ||| |||||||||| | | ||| ||||| |||| |||||| ||||    
T  34706690 tcacacattgatttaagcaaattagaaagtgagtgttgaaaagag 34706734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 38169025 - 38169158
Alignment:
Q  25 caacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataa 124  Q
    ||||||| ||||||| || ||||||||||||||| | | ||| |||||| |||||| || |||||||||||   | |||||||||   ||||||||||||    
T  38169025 caacactcacttttttattggcttaaatcatggtagatctcaaactttgtaaatggttttcacttaaagtgacggatcatacattagatttatccaataa 38169124  T
Q  125 gaaaatgagggttgaagagagtgttgaaaagaga 158  Q
     |||||||| |||||||| |||||||||||||||    
T  38169125 aaaaatgagtgttgaagatagtgttgaaaagaga 38169158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 46205544 - 46205671
Alignment:
Q  5 tctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcat 104  Q
    ||||||||||||||| | | ||||| | |||||||||| |||| |||||||||| ||| |||||||||||||||| ||||||||||||||| | | |||     
T  46205544 tctcttttcaacatttttttcaacattcactttttaattggctgaaatcatggtaggtctcacactttggaaatgagttccacttaaagtgatagatcac 46205643  T
Q  105 acattgattttatccaataagaaaatga 132  Q
    |||||| ||| | ||||| | |||||||    
T  46205644 acattggtttaagccaattaaaaaatga 46205671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 40631204 - 40631357
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    |||||| ||||||||||  ||||| ||||||||| |||| || ||||||||||||||||| |  || | ||| |||||| |||  | | |||||||| ||    
T  40631204 acactcacttttcaacacactctctaacacttacatttttattggcttaaatcatggtggatcccatattttagaaatgagtttaattcaaagtggtagg 40631303  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaa 154  Q
    ||||||  || ||| ||||||||| |||||||| ||||||| ||||||| ||||    
T  40631304 tcatacgatggtttcatccaataaaaaaatgagtgttgaagtgagtgttaaaaa 40631357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 145
Target Start/End: Original strand, 11832146 - 11832255
Alignment:
Q  35 tttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagg 134  Q
    |||||||| | ||||||| |||||||||||| || ||||||||||||||| ||||||| |||| ||| ||| ||||  |||||||||| ||| ||||||     
T  11832146 tttttaattgacttaaattatggtgggtttcgcattttggaaatgggttctacttaaattggtgggttatatattg-gtttatccaatgagagaatgagt 11832244  T
Q  135 gttgaagagag 145  Q
    |||||| ||||    
T  11832245 gttgaaaagag 11832255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 27243217 - 27243056
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    |||||||||||| |||| ||| || || ||| ||| | | || || ||||||||  ||||||   |||||||||||||||   |||| ||||||||| ||    
T  27243217 acactctcttttgaacactctttctaatactcactctctcattgggttaaatcaatgtgggtcatacactttggaaatggaacccacataaagtggtggg 27243118  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgt 162  Q
     ||| ||||||||||||||||||| | | |||| |||  |||||||||| ||||||||||||    
T  27243117 acatgcattgattttatccaataaaagagtgagtgttagagagagtgttcaaaagagagtgt 27243056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 176
Target Start/End: Original strand, 10817369 - 10817501
Alignment:
Q  45 gcttaaatcatggtgggtttcacactttggaaa-tgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagag 143  Q
    |||||||||| ||||| | | |||||||| ||| | |||||||||||||||| | ||||||| ||| ||||||||  |||||| |||||  ||||||| |    
T  10817369 gcttaaatcagggtggatctgacactttgaaaaataggttccacttaaagtgataggtcatagattaattttatctgataagagaatgaatgttgaagcg 10817468  T
Q  144 agtgttgaaaagagagtgtccctaacattcctc 176  Q
     ||||||||||||| ||||   |||||||||||    
T  10817469 ggtgttgaaaagagtgtgtgattaacattcctc 10817501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 37561830 - 37561888
Alignment:
Q  194 tttctttgtaaattcatggttgttccaaaaattgttatataaatagttgtttgaataac 252  Q
    |||||||||||||||||| |||| ||||||||||||||  |||||||||||| ||||||    
T  37561830 tttctttgtaaattcatgattgtcccaaaaattgttatgcaaatagttgtttaaataac 37561888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 52223545 - 52223463
Alignment:
Q  28 cacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattg 110  Q
    |||| ||||| |||| | |||||||| |||||||| ||||||||||||||||||||  ||||||||||||  |||| ||||||    
T  52223545 cactcactttctaattgacttaaatcgtggtgggtctcacactttggaaatgggttatacttaaagtggtgtgtcacacattg 52223463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 130
Target Start/End: Complemental strand, 9774291 - 9774208
Alignment:
Q  47 ttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaat 130  Q
    |||||| | ||||||| ||||| |||| |||| |||||||||||||||||| || | |||||| |||| ||||||||| |||||    
T  9774291 ttaaattaaggtgggtctcacattttgaaaattggttccacttaaagtggtgggacgtacattaatttcatccaataaaaaaat 9774208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 43657923 - 43657831
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtg 95  Q
    |||||||||||| |||| | | ||||||||| ||||| |||| |||||||||||  ||| || |||| ||||  |||||||||||||||||||||    
T  43657923 acactctctttttaacactgtttccaacactcactttctaattggcttaaatca--gtgagtctcaccctttaaaaatgggttccacttaaagtg 43657831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 53655468 - 53655401
Alignment:
Q  109 tgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctc 176  Q
    |||||| | ||||| ||||| |||| |||| ||||||||||||||||||| |||||||| ||||||||    
T  53655468 tgatttaagccaattagaaagtgagtgttggagagagtgttgaaaagagaatgtccctagcattcctc 53655401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 8475271 - 8475201
Alignment:
Q  56 ggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataaga 126  Q
    ||||||| ||||||||||||||||||||||| |||||| |||  | ||||||||  ||| |||||||||||    
T  8475271 ggtgggtctcacactttggaaatgggttccatttaaagcggtgagacatacattagtttcatccaataaga 8475201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 177
Target Start/End: Original strand, 20493542 - 20493629
Alignment:
Q  90 aaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctct 177  Q
    |||||||| || ||||||||||||| |||||||||   | |||| |||  |||||||||||||||| ||||||  ||| |||||||||    
T  20493542 aaagtggtaggacatacattgatttcatccaataaatgagtgagtgttagagagagtgttgaaaagtgagtgttgctagcattcctct 20493629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 162
Target Start/End: Original strand, 55283167 - 55283226
Alignment:
Q  103 atacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgt 162  Q
    |||||||||||||||||||||| | ||| || ||| ||||||||||| ||||| ||||||    
T  55283167 atacattgattttatccaataatagaataagtgttaaagagagtgtttaaaagtgagtgt 55283226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 5452157 - 5452243
Alignment:
Q  90 aaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctc 176  Q
    |||||||| ||  |||||||||||| ||||||||| | | |||  ||| ||||||||||||||||| ||||||  ||| ||||||||    
T  5452157 aaagtggtgggaaatacattgatttcatccaataaaagagtgaatgttaaagagagtgttgaaaagtgagtgttgctagcattcctc 5452243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 44225900 - 44225990
Alignment:
Q  58 tgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgt 148  Q
    ||||| |||||| ||| ||||||||||||||||||||| | || |||||| |  ||| ||||||||||| | |||| |||| ||| |||||    
T  44225900 tgggtctcacacattgaaaatgggttccacttaaagtgatgggacatacactagtttcatccaataagagagtgagtgttggagaaagtgt 44225990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 46622175 - 46622244
Alignment:
Q  47 ttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgatttta 116  Q
    |||||||| ||||||| | ||||||| |||||| |||| ||||||||||||  | |||||||| ||||||    
T  46622175 ttaaatcaaggtgggtcttacactttagaaatgtgttcaacttaaagtggtgtgacatacattaatttta 46622244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 13809186 - 13809130
Alignment:
Q  68 actttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataa 124  Q
    |||||||||||||   |||| |||| |||| || |||||||||||||||||||||||    
T  13809186 actttggaaatggaacccacataaaatggtgggacatacattgattttatccaataa 13809130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 28529334 - 28529250
Alignment:
Q  92 agtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctc 176  Q
    |||||| || ||||||||||||| ||||||||| | | |||| | |  |||||||||||||||| ||||||  ||| ||||||||    
T  28529334 agtggtgggacatacattgatttcatccaataaaagagtgagtgctagagagagtgttgaaaagtgagtgttgctagcattcctc 28529250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 42780739 - 42780663
Alignment:
Q  104 tacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctcttat 180  Q
    ||||| ||||| ||||||||||| |||||| |||  ||||||||||  ||||| ||||||| || || |||||||||    
T  42780739 tacatggatttcatccaataagagaatgagtgttagagagagtgttagaaagatagtgtccatagcactcctcttat 42780663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 46576031 - 46575959
Alignment:
Q  90 aaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgt 162  Q
    |||||||| || ||||||||| ||| | ||||||||| | |||| |||  ||||||||||||| |||||||||    
T  46576031 aaagtggtgggacatacattggtttcagccaataagagagtgagtgtttgagagagtgttgaagagagagtgt 46575959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 162
Target Start/End: Original strand, 50661599 - 50661691
Alignment:
Q  70 tttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgt 162  Q
    |||||||||||   |||| ||||||||| || ||| ||||||||||||| ||||| | | | || |||  |||||||||| ||||||||||||    
T  50661599 tttggaaatggaacccacataaagtggtgggacatgcattgattttatctaataaaagagtaagtgttagagagagtgtttaaaagagagtgt 50661691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 25002014 - 25002158
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||||||||||||||| ||||||||||||| ||||| |||| || ||||||||| |||||| |||||||||||||||||| ||||||||||||||| ||    
T  25002014 acactctcttttcaacactctctccaacactcactttctaattggtttaaatcatagtgggtctcacactttggaaatgggctccacttaaagtggtggg 25002113  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagag 145  Q
    ||| |||||| ||| | ||||| ||||| |||| |||||| ||||    
T  25002114 tcacacattggtttaagccaattagaaagtgagtgttgaaaagag 25002158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 6 - 140
Target Start/End: Complemental strand, 36325604 - 36325471
Alignment:
Q  6 ctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcata 105  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| | |||||||  ||||||||||||||||||||||| ||||| |    
T  36325604 ctcttttcaacattctctccaacactcactttttaattggcttaaatcatggtgggtcttacacttt-aaaatgggttccacttaaagtggtgggtcaca 36325506  T
Q  106 cattgattttatccaataagaaaatgagggttgaa 140  Q
    ||||| ||| | ||||| ||||| |||| ||||||    
T  36325505 cattggtttaagccaattagaaagtgagtgttgaa 36325471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 41034438 - 41034534
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggt 97  Q
    ||||||||||||||||| ||| ||||||||| ||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  41034438 acactctcttttcaacactctatccaacactcactttctaattggcttaaatcatggtgggtctcacactttggaaatgggttccacttaaaatggt 41034534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 47 - 177
Target Start/End: Complemental strand, 10300011 - 10299881
Alignment:
Q  47 ttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagt 146  Q
    ||||| |||||||| | | ||||||||||||||||| ||||| |||||||| |||||| |||||  || ||||||||||| |||||| ||||||||||||    
T  10300011 ttaaagcatggtggatcttacactttggaaatgggtcccactaaaagtggtgggtcatgcattgggttcatccaataagagaatgagtgttgaagagagt 10299912  T
Q  147 gttgaaaagagagtgtccctaacattcctct 177  Q
    |||||||||||||| |||||| |||| ||||    
T  10299911 gttgaaaagagagtatccctagcatttctct 10299881  T

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Target: chr5; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 80 - 178
Target Start/End: Complemental strand, 1649643 - 1649545
Alignment:
Q  80 ggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctctt 178  Q
    |||||||||||||||||| |  |||||||| |||| ||||||||||| | |||| |||  |||||||||||||||||||||||||||||||||||||||    
T  1649643 ggttccacttaaagtggtagagcatacattaatttcatccaataagatagtgagtgttagagagagtgttgaaaagagagtgtccctaacattcctctt 1649545  T

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Target: chr5; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 176
Target Start/End: Complemental strand, 20526882 - 20526751
Alignment:
Q  45 gcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagaga 144  Q
    |||||||||||| ||||||||| |||||| ||||||||| |||  |||||| | ||||||  |||||||| ||| || |||| ||| || ||| |||| |    
T  20526882 gcttaaatcatgttgggtttcaaactttgaaaatgggtttcacgaaaagtgatgggtcatgtattgatttcatcaaacaagagaataagtgttaaagaaa 20526783  T
Q  145 gtgttgaaaagagagtgtccctaacattcctc 176  Q
    ||||||||||||||||||| ||||||||||||    
T  20526782 gtgttgaaaagagagtgtctctaacattcctc 20526751  T

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Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 32309589 - 32309477
Alignment:
Q  64 tcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtc 163  Q
    |||||||||| ||||||||| ||||| ||||||| || |||||||| |||||||||||||||| | |||| | |  ||||| ||||||||||||||||||    
T  32309589 tcacactttgaaaatgggtttcacttgaagtggtcggacatacattaattttatccaataagagagtgagtgctagagagaatgttgaaaagagagtgtc 32309490  T
Q  164 cctaacattcctc 176  Q
     ||| ||||||||    
T  32309489 tctagcattcctc 32309477  T

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Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 179
Target Start/End: Original strand, 43461423 - 43461554
Alignment:
Q  48 taaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtg 147  Q
    ||||||||||||||| |||||||||| | |||||||||||| |||||| | ||||||||||||  || ||||||| | | |||||  ||| |||| ||||    
T  43461423 taaatcatggtgggtctcacactttgaatatgggttccactaaaagtgatgggtcatacattgcattcatccaatgacagaatgaatgttcaagacagtg 43461522  T
Q  148 ttgaaaagagagtgtccctaacattcctctta 179  Q
    || |||| |||||||| ||| |||||||||||    
T  43461523 ttaaaaaaagagtgtcactagcattcctctta 43461554  T

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Target: chr5; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 23260204 - 23260289
Alignment:
Q  25 caacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattg 110  Q
    |||||||||||||||||| | |||||||||| ||| || ||||||||| ||||||| ||||||||||| |||| ||||| ||||||    
T  23260204 caacacttactttttaattgacttaaatcatagtgtgtctcacactttagaaatggattccacttaaaatggtgggtcacacattg 23260289  T

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Target: chr5; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 173
Target Start/End: Original strand, 33854022 - 33854147
Alignment:
Q  48 taaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagtg 147  Q
    |||||||  |||||| |||  ||| |||||||||||||||||||||| ||||| |||||||| |||| || |||||  ||  |||| |||  ||| ||||    
T  33854022 taaatcaatgtgggtctcatgcttaggaaatgggttccacttaaagtagttggacatacattaatttcattcaatagtaatgtgagtgtttgagaaagtg 33854121  T
Q  148 ttgaaaagagagtgtccctaacattc 173  Q
    |||||||||||||||| |||||||||    
T  33854122 ttgaaaagagagtgtctctaacattc 33854147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 25002067 - 25001999
Alignment:
Q  109 tgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacattcctct 177  Q
    |||||| | ||||| ||||| |||| |||| |||||||||||||||||||||||||||| |||||||||    
T  25002067 tgatttaaaccaattagaaagtgagtgttggagagagtgttgaaaagagagtgtccctatcattcctct 25001999  T

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Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 6529882 - 6530012
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||||||||||||||| | |||| ||||||  |||| |  | ||||||||| | |||| || |||||| || ||||||||||||||| ||| |||| ||    
T  6529882 acactctcttttcaacactttctcaaacactcgctttatttttggcttaaattaaggtgagtctcacacattagaaatgggttccactaaaaatggtggg 6529981  T
Q  101 tcatacattgattttatccaataagaaaatg 131  Q
     ||||||||  ||| ||||||||||| ||||    
T  6529982 acatacattagtttcatccaataagagaatg 6530012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 7585154 - 7585014
Alignment:
Q  5 tctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcat 104  Q
    ||||||||||||| |||  | |||||| ||||| | ||  | |||||| | |||| || |||||| ||||||||||||| ||||||||||| | || |||    
T  7585154 tctcttttcaacactcttccaaacactcactttattatttgtttaaattaaggtgagtctcacacattggaaatgggtttcacttaaagtgataggacat 7585055  T
Q  105 acattgattttatccaataagaaaatgagggttgaagagag 145  Q
    ||| |  ||| ||||||||||| |||||| |||||| ||||    
T  7585054 acactagtttcatccaataagagaatgagtgttgaaaagag 7585014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 33655376 - 33655298
Alignment:
Q  184 aatacgtcactttctttgtaaattcatggttgttccaaaaattgttatataaatagttgtttgaataacacaactcttt 262  Q
    ||||| ||| ||||||| |||||| |||||||| |||||| || | ||| |||||||| ||  ||||||||||||||||    
T  33655376 aatacctcattttctttataaatttatggttgtaccaaaagttatcataaaaatagttattcaaataacacaactcttt 33655298  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 128
Target Start/End: Complemental strand, 39246691 - 39246653
Alignment:
Q  90 aaagtggttggtcatacattgattttatccaataagaaa 128  Q
    |||||||| || |||||||||||||||||||||||||||    
T  39246691 aaagtggtgggacatacattgattttatccaataagaaa 39246653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 34546523 - 34546600
Alignment:
Q  183 caatacgtcactttctttgtaaattcatggttgttccaaaaattgttatataaatagttgtttgaataacacaactct 260  Q
    |||||| ||| ||||||| || ||| || ||||| ||||||||||| ||| ||| |||||||  ||||||||||||||    
T  34546523 caatacctcattttctttatacatttatagttgtcccaaaaattgtcatacaaaaagttgttcaaataacacaactct 34546600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 15478777 - 15478836
Alignment:
Q  194 tttctttgtaaattcatggttgttccaaaaattgttatataaatagttgtttgaataacac 254  Q
    |||||||||||||| |||||||||||||||||||| |   |||||||||||  ||||||||    
T  15478777 tttctttgtaaatt-atggttgttccaaaaattgtcaaccaaatagttgttcaaataacac 15478836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 297008 - 296837
Alignment:
Q  1 acactctcttttcaacattctctccaacacttactttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttgg 100  Q
    ||||||||||||||||| |||||| |||||| ||||  | || || |||||| | ||||||| |||||| ||||||||||||||||||||| ||||| ||    
T  297008 acactctcttttcaacactctctcaaacactcacttcattattggtttaaatgaaggtgggtctcacacattggaaatgggttccacttaaggtggtggg 296909  T
Q  101 tcatacattgattttatccaataagaaaatgagggttgaagagagtgttgaaaagagagtgtccctaacatt 172  Q
     |||||| |  ||| ||||||||||| | |||| |||  ||||||||||||||||| |||||||||| ||||    
T  296908 acatacactagtttcatccaataagagagtgagtgttagagagagtgttgaaaagaaagtgtccctagcatt 296837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 132
Target Start/End: Complemental strand, 15329 - 15230
Alignment:
Q  33 actttttaatcggcttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatga 132  Q
    ||||||| || |||||||||||| |||||| | ||| |||| |||||  | ||| ||||| | || |||||||||||| ||||||||||| | |||||||    
T  15329 acttttttattggcttaaatcattgtgggtcttacattttgaaaatgaataccatttaaactagtgggtcatacattggttttatccaatcaaaaaatga 15230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1128 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1128
Description:

Target: scaffold1128; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 1852 - 1814
Alignment:
Q  140 agagagtgttgaaaagagagtgtccctaacattcctctt 178  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  1852 agagagtgttgaaaagagagtgtccttgacattcctctt 1814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 176
Target Start/End: Complemental strand, 3371 - 3242
Alignment:
Q  47 ttaaatcatggtgggtttcacactttggaaatgggttccacttaaagtggttggtcatacattgattttatccaataagaaaatgagggttgaagagagt 146  Q
    ||||||||| |||||| | |||||||| |||||| | ||| |||||||||   ||||||||||| ||| ||||||| | | |||||  |||| ||||||     
T  3371 ttaaatcattgtgggtcttacactttgaaaatggataccatttaaagtggagagtcatacattggtttcatccaattaaagaatgaacgttggagagagg 3272  T
Q  147 gttgaaaagagagtgtccctaacattcctc 176  Q
    ||| ||||  |||||||  | |||||||||    
T  3271 gttaaaaaatgagtgtctttgacattcctc 3242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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