View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_low_3 (Length: 627)
Name: NF2336_low_3
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_low_3 |
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| [»] scaffold1089 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 17 - 621
Target Start/End: Complemental strand, 2468824 - 2468217
Alignment:
| Q |
17 |
agaaagtgatatcaaaagaatattgaaaggtccattaatatgggaagacaattaggagaacaatttggcaaggtggaggatgtggacgtttatgatttcc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2468824 |
agaaagtgatatcaaaagaatattgaaaggtccattaatatgggaagacaattaggagaacaatttggcaaggtggaggatgtggacgtttatgatttcc |
2468725 |
T |
|
| Q |
117 |
ctgacaagccaaaattattaaagtgaaggtgttgtttgatatcagtaactctg--cttcctggactttacataggcaatgaaagagatggagttagttgg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2468724 |
ctgacaagccaaaattattaaagtgaaggtgttgtttgatatcagtaactctgtgcttcctggactttacataggcaatgaaagagatggagttagttgg |
2468625 |
T |
|
| Q |
215 |
ctgaattttagatttgaaaattttcctttgttttgcttcaattgtggcatcattggtcatggtgaagacacttgtgatatggaaggtttgaaggccgaga |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2468624 |
ctgaattttagatttgaaaattttcctttgttttgcttcaattgtggcatcattggtcatggtgaagacacttgtgatatggaaggtttgaaggccgaga |
2468525 |
T |
|
| Q |
315 |
atatcgggggtgatagaatcaatcagaggggtgcctggctgagatccaaaacctagctatggacaattcagtcatgtgcctaaggatttacatgacatga |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2468524 |
atatcgggggtgatagaatcaatcagaggggtgcctggctgagatccaaaacctagctatggacaattcagtcatgtgcctaacgatttacatgacatga |
2468425 |
T |
|
| Q |
415 |
ggaggatccaacggctttagtcgatagaataagcaatttaacggatgagttattgtctcacattctctcttttcttcacatcaaacaagctttcactgca |
514 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
2468424 |
ggaggatccaacggctttagtcgatagaataagcgatttaacggatgagttattgtctcacattttctcttttcttcccatcaaacaagctttcactgca |
2468325 |
T |
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| Q |
515 |
acagttctttcaaagcgttggacctcactctgttattcactag-ctgttttcagcttcgaggatgatgccttcaaattcaatagcttttgtcgtatgctc |
613 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2468324 |
acagttctttcaaagcgttggacctcactttgttattcactagccccttttcagctttgaggatgatgccttcaaattcgatagcttttgtcgtatgctc |
2468225 |
T |
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| Q |
614 |
tctgctcc |
621 |
Q |
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|||||||| |
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| T |
2468224 |
tctgctcc |
2468217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 437 - 555
Target Start/End: Original strand, 7813988 - 7814106
Alignment:
| Q |
437 |
gatagaataagcaatttaacggatgagttattgtctcacattctctcttttcttcacatcaaacaagctttcactgcaacagttctttcaaagcgttgga |
536 |
Q |
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|||||||| ||| ||||| |||||||||||||||||||||||||||||||||| | | |||| |||||| || |||| || ||||| ||||| |||| |
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| T |
7813988 |
gatagaatcagcgatttaccggatgagttattgtctcacattctctcttttctcccaactaaactcgctttctctacaaccgtactttccaagcgatgga |
7814087 |
T |
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| Q |
537 |
cctcactctgttattcact |
555 |
Q |
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| T |
7814088 |
ccggactctgctattcact |
7814106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 555
Target Start/End: Complemental strand, 7806889 - 7806768
Alignment:
| Q |
434 |
gtcgatagaataagcaatttaacggatgagttattgtctcacattctctcttttcttcacatcaaacaagctttcactgcaacagttctttcaaagcgtt |
533 |
Q |
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|||||||||||||| ||||| | ||||||||| || | |||||||||||||||| || | ||||| ||||| ||| | | ||||||| ||||| | |
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| T |
7806889 |
gtcgatagaataagtgatttaccagatgagttactgctttacattctctcttttctccaaaccaaactggcttttactacgtccattctttccaagcggt |
7806790 |
T |
|
| Q |
534 |
ggacctcactctgttattcact |
555 |
Q |
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||||| ||||||| |||||||| |
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| T |
7806789 |
ggaccgcactctgctattcact |
7806768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 436 - 555
Target Start/End: Complemental strand, 37997716 - 37997597
Alignment:
| Q |
436 |
cgatagaataagcaatttaacggatgagttattgtctcacattctctcttttcttcacatcaaacaagctttcactgcaacagttctttcaaagcgttgg |
535 |
Q |
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||||||||| ||| ||||| | ||||||||||||| | |||| ||||||||||| | || |||| ||||| ||| |||| |||||||||||||| ||| |
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| T |
37997716 |
cgatagaatcagcgatttaccagatgagttattgtgttacatactctcttttctaccaatgaaactcgcttttactacaactgttctttcaaagcggtgg |
37997617 |
T |
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| Q |
536 |
acctcactctgttattcact |
555 |
Q |
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||| |||||| | |||||| |
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| T |
37997616 |
accctactctgctgttcact |
37997597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 437 - 555
Target Start/End: Complemental strand, 19317781 - 19317663
Alignment:
| Q |
437 |
gatagaataagcaatttaacggatgagttattgtctcacattctctcttttcttcacatcaaacaagctttcactgcaacagttctttcaaagcgttgga |
536 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||| | |||||||||||||||| | | |||| |||||| ||| || | ||||||| |||||||||| |
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| T |
19317781 |
gatagaataagcgatttaccagatgagttattgatttacattctctcttttctcccaacaaaactagcttttactacagccattctttccaagcgttgga |
19317682 |
T |
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| Q |
537 |
cctcactctgttattcact |
555 |
Q |
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|| |||||| |||||||| |
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| T |
19317681 |
cccaactctgctattcact |
19317663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1089 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold1089
Description:
Target: scaffold1089; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 543
Target Start/End: Complemental strand, 1705 - 1599
Alignment:
| Q |
437 |
gatagaataagcaatttaacggatgagttattgtctcacattctctcttttcttcacatcaaacaagctttcactgcaacagttctttcaaagcgttgga |
536 |
Q |
| |
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|||||||| || || ||| | ||||| ||||| | |||||| ||||||||||||| || |||| ||||||||| | ||||||||||| ||||| |||| |
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| T |
1705 |
gatagaatcagtaacttacctgatgaattattatgtcacatactctcttttcttcccaccaaaatcgctttcactaccacagttctttcgaagcggtgga |
1606 |
T |
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| Q |
537 |
cctcact |
543 |
Q |
| |
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|| |||| |
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| T |
1605 |
ccccact |
1599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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