View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_low_31 (Length: 301)
Name: NF2336_low_31
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 24 - 286
Target Start/End: Original strand, 31828144 - 31828406
Alignment:
| Q |
24 |
ttatggagcatttggaaggcgagaaacgctnnnnnnnntcaggacaaaaaggtctcaactgataagattgtagatcaagtcggattactctcttggaact |
123 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31828144 |
ttatggagcatttggaaggcgagaaacgctaaaaaaattcaggacaaaaaggtctcgactgataagattgtagatcaagtcagattactctcttggaact |
31828243 |
T |
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| Q |
124 |
ggttaacaaaatccacaatcttcaaatatgaactggatcagtggtggtcgtgtcctcttgcacgcttaggtgtcatgggagaagcaaaatcaggaacttg |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31828244 |
ggttaacaaaatccacaatcttcaaatatgaactggatcagtggtggtcgtgtcctcttgcactcttaggtgtcatgggagaagcaaaatcaggaactta |
31828343 |
T |
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| Q |
224 |
aggaaggaatgagaggtacagcttgtgggttttgcagcataggggtgtctctgaggtacaact |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31828344 |
aggaaggaatgagaggtacagcttgtgggttttgcagcataggggtgtctctgaggtacaact |
31828406 |
T |
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