View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_low_34 (Length: 295)
Name: NF2336_low_34
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_low_34 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 44518281 - 44518003
Alignment:
| Q |
19 |
gaaattagagctaccagggaacaacatagtttcagatgaggaagaggagagtgatgatgaaatgctatacagaagaactgtttctatttagcacaacaat |
118 |
Q |
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| T |
44518281 |
gaaactagagctaccagggaacgacatagtttcagatgaggaagaggagagtgatgatgaaatgctatatagaagaactgtttctctt-agcacagcaat |
44518183 |
T |
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| Q |
119 |
gtatcttcatttttgtttttatatttgcttgatgaaaaaacaagagtataa---tcatgtcatcaaatgaaggacagagattcatctatattataattat |
215 |
Q |
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| T |
44518182 |
gtatcttcatttttgtttttatatttgcttgatggaaaaacaagagtataactatcatgtcatcaaatgaaggacagagattcatctatattataattat |
44518083 |
T |
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| Q |
216 |
tactgcatttgtcaactatcttttaggtgaagtgaggtataaaaccaatgataacatgtggcacaatacatgttagttat |
295 |
Q |
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| T |
44518082 |
tactgcatttgtcaactatcttttaggtgaagtgaggtattaaaccaatgataacatgtggcacagtacatgttagttat |
44518003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 44519004 - 44518811
Alignment:
| Q |
19 |
gaaattagagctaccagggaacaacatagtttcagatgaggaagaggagagtgatgatgaaatgctatacagaagaactgtttctatttagcacaacaat |
118 |
Q |
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| T |
44519004 |
gaaattaaagctacccgggaatgacattgttttaaatgaggaagaggagagtgatgatgaaatgctatacagaagaactgtttctctttagcacaacaat |
44518905 |
T |
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| Q |
119 |
gtatcttcat-ttttgtttttatatttgcttgatgaaaaaac--aagagtataa---tcatgtcatcaaatgaaggacagagattcatctatatt |
207 |
Q |
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| T |
44518904 |
gtatttttatattttttttttat-tttgcttgatgaaacaactatagagcataactgtcatgttatcaaatgaaggacaaagattcatctctatt |
44518811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 44518726 - 44518664
Alignment:
| Q |
232 |
tatcttttaggtgaagtgaggtataaaaccaatgataacatgtggcacaatacatgttagttat |
295 |
Q |
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| T |
44518726 |
tatcttttaggtgaagggaggtatgaaaccaatgatagcatgtggtacagtaca-gttagttat |
44518664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 52107731 - 52107563
Alignment:
| Q |
19 |
gaaattagagctaccagggaacaacatagtttcagatgaggaagaggagagtgatgatgaaatgctatacagaagaactgtttctatttagcacaacaat |
118 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
52107731 |
gaaattagagctacccgggaatgacatagtttcagatgaggaagaggagagtgatgatgaaatgctatacagaagaactgtttctctttagcagaacaat |
52107632 |
T |
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| Q |
119 |
gtatcttcatttttgtttttatatttgcttgatgaaaaaacaagagtataa---tcatgtcatcaaatgaaggac |
190 |
Q |
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| T |
52107631 |
gcat-----tttttatttttat-tttgcttgatgaaataactagagtataactttcatgttatcaaatgaaggac |
52107563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 52107478 - 52107411
Alignment:
| Q |
228 |
caactatcttttaggtgaagtgaggtataaaaccaatgataacatgtggcacaatacatgttagttat |
295 |
Q |
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| T |
52107478 |
caactatctttcaggtgaaatgaggtataaaaccaatgatagcatgtggtatagtacttgttagttat |
52107411 |
T |
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