View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_low_35 (Length: 291)
Name: NF2336_low_35
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 32896907 - 32896652
Alignment:
| Q |
19 |
cacagagctggattggcatgtaatgagagaaaagttgcaatttaagttcattgttttacttcttgtgcccagcaattcccaactagctaatgcattccct |
118 |
Q |
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| T |
32896907 |
cacagagctggattggcatgtaatgagagaaaagttgcaatttaagttcattgttttacttcttgtgcccagcaattcccaactagctaatgcattccct |
32896808 |
T |
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| Q |
119 |
aagccactacattttcatgtttttatggtcttttttccaagttctcgctatgcttttatgatcttttccaactaaccgaaataaataacagaaaaattta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32896807 |
aagccactacattttcatgtttttatggtcttttttccaagttctcgctatgcttttatgatcttttccaactaaccgaaataaataacagaaaaattta |
32896708 |
T |
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| Q |
219 |
taagttgatacatcatatattcaagtaataatagaacaaattaatgacaaaagtaa |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32896707 |
taagttgatacatcatatattcaagtaataatagaacaaattaatgacaaaagtaa |
32896652 |
T |
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