View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_low_36 (Length: 290)
Name: NF2336_low_36
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 37155960 - 37155689
Alignment:
| Q |
16 |
cttatatagaagaaataattactcnnnnnnnaaggagaagaaataattacttagcgagttgaaatttgatgatgcctaaggtgaaaatctaccatgataa |
115 |
Q |
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| T |
37155960 |
cttatatagaagaaataattactttttttttaaggagaagaaataattacttagcgagttgaaatttgatgatgcctaaggtgaaaatctaccatgataa |
37155861 |
T |
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| Q |
116 |
tcaagttgctcttcaaatcaatgacagacttaatcttttatagaaattaattgtcactgtcaaataaaagctcggactagggaaattgtcattgaattgg |
215 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37155860 |
tcaagttgctcttcacatcaatggcagacttaatcttttatagaaattaattgtcactgtcaaataaaagctcggactagggaaattgtcattgaattgg |
37155761 |
T |
|
| Q |
216 |
taaaccttaatgaccaccagcctacaagtattctca--gtttctctggtgttctcattcagtttcttctcac |
285 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
37155760 |
taaaccttaatgaccaccagcctacaagtattctcacggtttctctggtgttctcattcagtttcttttcac |
37155689 |
T |
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