View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2336_low_4 (Length: 564)
Name: NF2336_low_4
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_low_4 |
 | |
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| [»] scaffold0141 (2 HSPs) |
| | |
|
| [»] scaffold0638 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 262 - 545
Target Start/End: Complemental strand, 8429923 - 8429640
Alignment:
| Q |
262 |
attgtgttacaatagtttaggctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaagctaattatcccataacaagtacaaaa |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8429923 |
attgtgttacaatagtttaggctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaagctaattatcccataacaagtacaaaa |
8429824 |
T |
|
| Q |
362 |
ctccagatttcctatttcaactatctgtattattaaaactttctaataaccttgataattttaaacatcaatatgaagtcctgcaaaaatgctcgctggc |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8429823 |
ctccagatttcctatttcaactatctgtattattaaaactttctaataaccttgataattttaaacatcaatatgaagtcctgcaaaaatgctcgctggc |
8429724 |
T |
|
| Q |
462 |
atcagcacattaaagccttgtcctctgcatatctgctacaccaatattaaaaaccaaacagaagctttgaacatgtgggagacg |
545 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8429723 |
atcggcacattaaagccttgtcctctgcatatctgctacaccaatattaaaaaccaaacagaagctttgaacatgtgggagacg |
8429640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 262 - 545
Target Start/End: Original strand, 8449488 - 8449777
Alignment:
| Q |
262 |
attgtgttacaatagtttaggctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaagctaattatcccataacaagtacaaaa |
361 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
8449488 |
attgtgttacaatagttctggctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaagctaattatcccttaacaagtacaaaa |
8449587 |
T |
|
| Q |
362 |
ctccagatttcctatttcaactatctgtattattaaaactttctaataaccttgataattttaaacatcaatatgaagtcctgcaaaaatgctcgct--- |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8449588 |
ctccagatttcctatttcaactatctgtattattaaaactttctaataaccttgataattttaaacatcaatatgaagtcctgcaaaaatgctcgctggc |
8449687 |
T |
|
| Q |
459 |
---ggcatcagcacattaaagccttgtcctctgcatatctgctacaccaatattaaaaaccaaacagaagctttgaacatgtgggagacg |
545 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8449688 |
accggcaccggcacattaaagccttgtcctctgcatatctgctacaccaatattaaaaaccaaacagaagctttgaacatgtgggagacg |
8449777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 26 - 216
Target Start/End: Complemental strand, 8430159 - 8429969
Alignment:
| Q |
26 |
atgtcgaagaatatgattgtgatattaaactattttcagtattgttaaaggtaatctcaaactccatgaaagcaaagattaagcttgcaatgtgcatagc |
125 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8430159 |
atgtccaaaaatatgattgtgatattaaactattttcagtattgttaaaggtaatctcaaactccatgaaagcaaagattaagcttgcaatgtgcatagc |
8430060 |
T |
|
| Q |
126 |
tttgaagaaaacaaaggaagtgagaaaaaggaattttattattctcaaaatctaagaattacagtgaagcactatagctttacatagagtg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8430059 |
tttgaagaaaacaaaggaagtgagaaaaaggaattttattattctcaaaatctaagaattacagtgaagcactatagctttacatagagtg |
8429969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 8449252 - 8449442
Alignment:
| Q |
26 |
atgtcgaagaatatgattgtgatattaaactattttcagtattgttaaaggtaatctcaaactccatgaaagcaaagattaagcttgcaatgtgcatagc |
125 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8449252 |
atgtccaaaaatatgattgtgatattaaactattttcagtattgttaaaggtaatctcaaactccatgaaagcaaagattaagcttgcaatgtgcatagc |
8449351 |
T |
|
| Q |
126 |
tttgaagaaaacaaaggaagtgagaaaaaggaattttattattctcaaaatctaagaattacagtgaagcactatagctttacatagagtg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8449352 |
tttgaagaaaacaaaggaagtgagaaaaaggcattttattattctcaaaatctaagaattacagtgaagcactatagctttacatagagtg |
8449442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 168
Target Start/End: Original strand, 25973850 - 25973954
Alignment:
| Q |
65 |
tattgttaa-aggtaatctcaaactccatgaaagcaa-agattaagcttgcaatgtgcatagctttgaagaaaacaaaggaagtgagaaaaaggaatttt |
162 |
Q |
| |
|
||||||||| ||| |||||||| | |||||||||||| | | ||||||||||||||||| |||| ||||||| | |||| || |||||||| | || ||| |
|
|
| T |
25973850 |
tattgttaagaggcaatctcaatccccatgaaagcaagaaaataagcttgcaatgtgcaaagctatgaagaaga-aaagaaaatgagaaaaggaaaattt |
25973948 |
T |
|
| Q |
163 |
attatt |
168 |
Q |
| |
|
|||||| |
|
|
| T |
25973949 |
attatt |
25973954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 262 - 545
Target Start/End: Original strand, 7625 - 7907
Alignment:
| Q |
262 |
attgtgttacaatagtttaggctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaagctaattatcccataacaagtacaaaa |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7625 |
attgtgttacaatagtttaggctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaagctaattatcccttaacaagtacaaaa |
7724 |
T |
|
| Q |
362 |
ctccagatttcctatttcaactatctgtattattaaaactttctaataaccttgataattttaaacatcaatatgaagtcctgc-aaaaatgctcgctgg |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| | |
|
|
| T |
7725 |
ctccagatttcctatttcaactatctgtattattaaaactttctaataaccttgataattttaaacatcagtatgaagtcctgcaaaaaatgctcgc--g |
7822 |
T |
|
| Q |
461 |
catcagcacattaaagccttgtcctctgcatatctgctacaccaatattaaaaaccaaacagaagctttgaacatgtgggagacg |
545 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7823 |
catcggcacattaaagccttgtcctctgcgtatctgctacaccaatattaaaaaccaatcagaagctttgaacatgtgggagacg |
7907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 7389 - 7579
Alignment:
| Q |
26 |
atgtcgaagaatatgattgtgatattaaactattttcagtattgttaaaggtaatctcaaactccatgaaagcaaagattaagcttgcaatgtgcatagc |
125 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7389 |
atgtccaaaaatatgattgtgatattaaactattttcagtattgttaaaggtaatctcaaactccattaaagcaaagattaagcttgcaatgtgcatagc |
7488 |
T |
|
| Q |
126 |
tttgaagaaaacaaaggaagtgagaaaaaggaattttattattctcaaaatctaagaattacagtgaagcactatagctttacatagagtg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7489 |
tttgaagaaaacaaaggaagtgagaaaaaggcattttattattctcaaaatctaagaattacagtgaagcactatagctttacatagagtg |
7579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 6e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 4238600 - 4238742
Alignment:
| Q |
74 |
aggtaatctcaaactccatgaaagcaaagattaagcttgcaatgtgcatagctttgaagaaaacaaaggaagtgagaaaaaggaattttattattctcaa |
173 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4238600 |
aggtaatctcaaactccatgaaagcaaaggttaagcttgcaatgtgcatagatttgaagaaaacaaaggaagtgagaaaaaggaattttattattctcaa |
4238699 |
T |
|
| Q |
174 |
aatctaagaattacagtgaagcactatagctttacatagagtg |
216 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||| |||||||| |
|
|
| T |
4238700 |
aatctaagtattacaatgaagcactatagctttatatagagtg |
4238742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 345
Target Start/End: Original strand, 4238913 - 4238991
Alignment:
| Q |
267 |
gttacaatagtttaggctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaagctaattatcc |
345 |
Q |
| |
|
||||||| ||||| ||||||| ||||||||| |||| |||||||||||||||||| ||||||| ||| |||||||||| |
|
|
| T |
4238913 |
gttacaaccgtttaagctagttgagtttcacatagttgcttgctacacaagtaacatatgcatcccaatctaattatcc |
4238991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 368 - 454
Target Start/End: Complemental strand, 3750969 - 3750881
Alignment:
| Q |
368 |
atttcctatttcaactatctgtat-tattaaaactttctaataaccttgataa-ttttaaacatcaatatgaagtcctgcaaaaatgct |
454 |
Q |
| |
|
||||| |||||||||||||| ||| | | |||||||||||||| |||||||| |||| |||||||| |||| |||| |||||||||| |
|
|
| T |
3750969 |
atttcatatttcaactatctctatctctctaaactttctaataaacttgataagctttacacatcaatctgaaatccttcaaaaatgct |
3750881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 44272572 - 44272624
Alignment:
| Q |
282 |
gctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaa |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
44272572 |
gctagttaagtttcacacagttacttgctacacaagtaacatatacatctcaa |
44272624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 14973490 - 14973383
Alignment:
| Q |
79 |
atctcaaactccatgaaagcaaagattaagcttgcaatgtgcatagctttgaagaaaacaaaggaagtgagaaaaaggaattttattattctcaaaatct |
178 |
Q |
| |
|
||||||||||||||||||| | | | ||||||||||| | ||||||| ||||||| |||||| | || |||| | ||||||||| ||||| |||||||| |
|
|
| T |
14973490 |
atctcaaactccatgaaagtagaaaataagcttgcaa--tacatagctatgaagaagacaaagtatgtaagaagagggaattttactattcccaaaatct |
14973393 |
T |
|
| Q |
179 |
aagaattaca |
188 |
Q |
| |
|
|| |||||| |
|
|
| T |
14973392 |
gagtattaca |
14973383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 342
Target Start/End: Original strand, 33894486 - 33894552
Alignment:
| Q |
276 |
gtttaggctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaagctaatta |
342 |
Q |
| |
|
|||||||| |||||||||| | ||||||||||||||| ||||||||||||| | ||||||||||| |
|
|
| T |
33894486 |
gtttaggcaagttaagttttaaacagttacttgctacccaagtaacaaatgtaatacaagctaatta |
33894552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 8564561 - 8564480
Alignment:
| Q |
105 |
taagcttgcaatgtgcatagctttgaagaaaacaaaggaagtgagaaaaaggaattttattattctcaaaatctaagaatta |
186 |
Q |
| |
|
|||| ||||||||||||||| ||| ||||| |||||| ||||| ||| ||||||||| ||||||| ||||| |||| |||| |
|
|
| T |
8564561 |
taagattgcaatgtgcatagatttaaagaagacaaagaaagtgtgaacaaggaatttcattattcagaaaatgtaagtatta |
8564480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0638 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 178
Target Start/End: Original strand, 7948 - 8051
Alignment:
| Q |
74 |
aggtaatctcaaactccatgaaagcaaagattaagcttgcaatgtgcatagctttgaagaaaacaaaggaagtgagaaaaaggaattttattattctcaa |
173 |
Q |
| |
|
||||||||||||||| |||||||| || | || ||| |||||||||| ||||| ||||| |||| | | ||||||| |||||| |||||||||| ||| |
|
|
| T |
7948 |
aggtaatctcaaacttcatgaaagtgaaaaatagacttacaatgtgcatggctttaaagaagacaaggaaggtgagaagaaggaa-tttattattcacaa |
8046 |
T |
|
| Q |
174 |
aatct |
178 |
Q |
| |
|
||||| |
|
|
| T |
8047 |
aatct |
8051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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