View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_low_47 (Length: 250)
Name: NF2336_low_47
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 43714619 - 43714859
Alignment:
| Q |
1 |
tcaaatattacatttcaataattataaaacctacacagattaaaatattttacaattattctaaacacgtaaatgatatcaaacattaaatttctagcaa |
100 |
Q |
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| T |
43714619 |
tcaaatattccatttcaataattataaaacctacacagattaaaatattttacaattattctaaacacgtaaatgatatcaaacattaaatttctagcaa |
43714718 |
T |
|
| Q |
101 |
taaacaactcagcaaattgtgaactactactagatttcctgcatacaaattgcaacctttattgcatgcaacttggtaaactccatatcctatatttagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
43714719 |
taaacaactcagcaaattgtgaactactactagatttcctgcatacaaattgcaacctttattgcatgcaaattggtaaactccatatcctatatttggt |
43714818 |
T |
|
| Q |
201 |
taatatacacatgcaaatgttctttcagtcttcagaattat |
241 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |
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| T |
43714819 |
taatatacacatgcaaatgttctttcagtcttgagaattat |
43714859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 52893097 - 52892868
Alignment:
| Q |
9 |
tacatttcaataattataaaacctacacagattaaaatattttacaattattctaaacacgtaaatgatatcaaacattaaatttctagcaataaacaac |
108 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| | |||||||||||| ||| |
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| T |
52893097 |
tacagttcaataattataaaacctatacagattaaaatattttacaaatattctaaacacgtgaatgatatcaaac-----acttctagcaataacgaac |
52893003 |
T |
|
| Q |
109 |
tcagcaaattgtgaactactactagatttcctgcatacaaattgcaacc-----tttattgcatgcaacttggtaaactccatatcctatatttagttaa |
203 |
Q |
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| |||||||||| | |||||||||||||| |||| ||||||||| ||| |||||||||| |||||||||| ||||||||||||||||||| |
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| T |
52893002 |
ttgccaaattgtga---attactagatttcctgtgtacagattgcaacctttttttttttgcatgcaaattggtaaactaaatatcctatatttagttaa |
52892906 |
T |
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| Q |
204 |
tatacacatgcaaatgttctttcagtcttcagaattat |
241 |
Q |
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|||| ||||||||||||||| ||||||||||||||| |
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| T |
52892905 |
tatatggatgcaaatgttctttgagtcttcagaattat |
52892868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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