View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_low_49 (Length: 250)
Name: NF2336_low_49
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_low_49 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 40420937 - 40420697
Alignment:
| Q |
10 |
aagaatataaacaggagataagaaattaagagagcaacatttggattaccttcccttctctgcaatctgtttttgtaatacctgaaacatttttataaaa |
109 |
Q |
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| T |
40420937 |
aagaaaataaacaggagataataaattaagagagcaacatttggattaccttcccttctctgcaatctgtttttgtaatacctgaaatatttttataaaa |
40420838 |
T |
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| Q |
110 |
caagaatcattaaaacggtagaaaaatacagagcatatacaacagcatttcttctaatggcaaaagagctctacaacccatccgcaatttcatttctcca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
40420837 |
caagaatcattaaaacggtagaaaaatacagagcatatacaacagcatttcttctaatggcaaaagagctctccaacccatccgctgtttcatttctcca |
40420738 |
T |
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| Q |
210 |
atccacaaagaagccataaaaataccccatcaaaacgaagt |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
40420737 |
atccacaaagaagccataaaaataccccatcaaaacgaagt |
40420697 |
T |
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