View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_low_50 (Length: 249)
Name: NF2336_low_50
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_low_50 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 27990182 - 27990411
Alignment:
| Q |
16 |
atgatacaactcaccatcaaattatagtttaacttattatatttcttgtatatatcatacgctacctatagttagttattagttagttgatgtgattctc |
115 |
Q |
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| T |
27990182 |
atgatacaactcaccatcaaattatagtttagcttattatatttctt----atatcatacgctacctatagttagttattagttagttgatgtgattctc |
27990277 |
T |
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| Q |
116 |
tacatacgagcacatagctatcatagaccatatactaacactataaatgttagttgtaacttcaacattcattaagagaaatgagtttgtttgattaatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27990278 |
tacatacgagcacatagctatcatagaccatatactaacactataaatgttagttgtaacttcaacattcattaagagaaatgagtttgtttgattaatt |
27990377 |
T |
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| Q |
216 |
ttctctctcacaatagtcatttctaagaacttaa |
249 |
Q |
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| T |
27990378 |
ttctctctcacaatagtcatttctaagaacttaa |
27990411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 28000640 - 28000861
Alignment:
| Q |
18 |
gatacaactcaccatcaaattatagtttaacttattatatttcttgtatatatcatacgctacctatagttagttattagttagttgatgtgattctcta |
117 |
Q |
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||||||||||||||||||| ||||||||| ||||||||||||||| |||||| |||||||||| |||||||| ||||||||| ||| |
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| T |
28000640 |
gatacaactcaccatcaaactatagtttagcttattatatttctt----atatcacacgctacctagagttagtt-----------gatgtgattttctg |
28000724 |
T |
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| Q |
118 |
catacgagcacat----agctatcatagaccatatactaac-actataaatgttagttgtaacttcaacattcattaagagaaatgagtttgtttgatta |
212 |
Q |
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|||| |||||||| |||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28000725 |
cataagagcacatgattagctatcatataccatatactaactactataaacgttagttgtaacttcaacattcattaagagaaatgagtttgtttgatta |
28000824 |
T |
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| Q |
213 |
attttctctctcacaatagtcatttctaagaacttaa |
249 |
Q |
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| T |
28000825 |
attttctctctcacaatagtcatttctaagaacttaa |
28000861 |
T |
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