View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2336_low_52 (Length: 247)

Name: NF2336_low_52
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2336_low_52
NF2336_low_52
[»] chr8 (6 HSPs)
chr8 (12-247)||(43446604-43446839)
chr8 (56-202)||(43446354-43446501)
chr8 (56-221)||(43446410-43446577)
chr8 (54-174)||(43446307-43446427)
chr8 (95-173)||(43446536-43446614)
chr8 (56-134)||(43446271-43446349)
[»] scaffold0592 (5 HSPs)
scaffold0592 (85-178)||(3159-3251)
scaffold0592 (85-160)||(3008-3082)
scaffold0592 (157-222)||(3004-3070)
scaffold0592 (85-134)||(3234-3283)
scaffold0592 (85-176)||(3310-3401)


Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 43446839 - 43446604
Alignment:
Q  12 atgaaaatgtcattgatgagttttatggaagtaccatttgtacaaaatgttccatgaactcgcatgttaagatagttgcgaggaaggtaagacctgaaat 111  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43446839 atgaaaatgccattgatgagttttatggaagtaccatttgtacaaaatgttccatgaactcgcatgttaagatagttgcgaggaaggtaagacctgaaat 43446740  T
Q  112 atggctctttaaaaaccttgaaaagttccatgaactcgcatgttgagggagttgcgaggaaggtaagattggaacacgactctttaaaaaccttaaaagt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  43446739 atggctctttaaaaaccttgaaaagttccatgaactcgcatgttgagggagttgccaggaaggtaagattggaacacgactctttaaaaaccttgaaagt 43446640  T
Q  212 tccatgaactcacagagttgagtgaaaggtaagaac 247  Q
    ||||||||||||||||||||||||||||||||||||    
T  43446639 tccatgaactcacagagttgagtgaaaggtaagaac 43446604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 56 - 202
Target Start/End: Complemental strand, 43446501 - 43446354
Alignment:
Q  56 aaatgttccatgaactcgcatgttaagatagttgcgaggaaggtaagacctgaaatatggctctttaaaaaccttgaaaagttccatgaactcgcatgtt 155  Q
    ||||||||||||||||||||||||| |  ||||||||||||||||||  || ||| |||| |||||||||||||  ||| |||||||||||| |||||||    
T  43446501 aaatgttccatgaactcgcatgttaggggagttgcgaggaaggtaagttctaaaacatgggtctttaaaaacctcaaaatgttccatgaacttgcatgtt 43446402  T
Q  156 gagggagttgcgaggaaggtaaga-ttggaacacgactctttaaaaac 202  Q
    || || ||||| ||||||||||||  || |||||||||||||||||||    
T  43446401 gaaggtgttgcaaggaaggtaagacctgaaacacgactctttaaaaac 43446354  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 221
Target Start/End: Complemental strand, 43446577 - 43446410
Alignment:
Q  56 aaatgttccatgaactcgcatgttaagatagttgcgaggaaggtaagacctgaaatatggctctttaaaaaccttgaaaagttccatgaactcgcatgtt 155  Q
    |||||||||||||| || | | |||||  || ||||||||||  |  ||||||||| || ||||||||||||||||||| ||||||||||||||||||||    
T  43446577 aaatgttccatgaaatctcctcttaagggagctgcgaggaagacactacctgaaatgtgactctttaaaaaccttgaaatgttccatgaactcgcatgtt 43446478  T
Q  156 gagggagttgcgaggaaggtaagat-tggaacacgactctttaaaaaccttaaaa-gttccatgaact 221  Q
      ||||||||||||||||||||| | |  |||| |  ||||||||||||| |||| ||||||||||||    
T  43446477 aggggagttgcgaggaaggtaagttctaaaacatgggtctttaaaaacctcaaaatgttccatgaact 43446410  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 174
Target Start/End: Complemental strand, 43446427 - 43446307
Alignment:
Q  54 caaaatgttccatgaactcgcatgtt-aagatagttgcgaggaaggtaagacctgaaatatggctctttaaaaaccttgaaaagttccatgaactcgcat 152  Q
    |||||||||||||||||| ||||||| ||| | ||||| ||||||||||||||||||| | | |||||||||||| | ||||  ||||||||||||||||    
T  43446427 caaaatgttccatgaacttgcatgttgaaggt-gttgcaaggaaggtaagacctgaaacacgactctttaaaaacatcgaaatattccatgaactcgcat 43446329  T
Q  153 gttgagggagttgcgaggaagg 174  Q
    |||||   ||||||||||||||    
T  43446328 gttgaaaaagttgcgaggaagg 43446307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 43446614 - 43446536
Alignment:
Q  95 aaggtaagacctgaaatatggctctttaaaaaccttgaaaagttccatgaactcgcatgttgagggagttgcgaggaag 173  Q
    ||||||||| |||||| ||||||||||||||||||||||| |||||||||| || | | || |||||| ||||||||||    
T  43446614 aaggtaagaactgaaacatggctctttaaaaaccttgaaatgttccatgaaatctcctcttaagggagctgcgaggaag 43446536  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 43446349 - 43446271
Alignment:
Q  56 aaatgttccatgaactcgcatgttaagatagttgcgaggaaggtaagacctgaaatatggctctttaaaaaccttgaaa 134  Q
    |||| ||||||||||||||||||| | | |||||||||||||| ||| |||| || ||| || ||||||| || |||||    
T  43446349 aaatattccatgaactcgcatgttgaaaaagttgcgaggaaggcaagtcctgcaacatgactttttaaaatccgtgaaa 43446271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 178
Target Start/End: Original strand, 3159 - 3251
Alignment:
Q  85 agttgcgaggaaggtaagacctgaaatatggctctttaaaaaccttgaaaagttccatgaactcgcatgttgagggagttgcgaggaaggtaag 178  Q
    |||||||||||||||| |  |||||| |||||||||||||| ||||| |||||||||  ||||| | |||| | ||||||||||| ||||||||    
T  3159 agttgcgaggaaggtatgttctgaaacatggctctttaaaatccttg-aaagttccacaaactcacttgttaaaggagttgcgagaaaggtaag 3251  T

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Target: scaffold0592; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 3008 - 3082
Alignment:
Q  85 agttgcgaggaaggtaagacctgaaatatggctctttaaaaaccttgaaaagttccatgaactcgcatgttgaggg 160  Q
    |||||||||||||||||| | ||||| ||| |  |||||||||||  |||||||||||||||||||||||| ||||    
T  3008 agttgcgaggaaggtaagtcttgaaacatgacattttaaaaacctc-aaaagttccatgaactcgcatgttaaggg 3082  T

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Target: scaffold0592; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 3004 - 3070
Alignment:
Q  157 agggagttgcgaggaaggtaaga-ttggaacacgactctttaaaaaccttaaaagttccatgaactc 222  Q
    ||||||||||||||||||||||  ||| |||| |||  ||||||||||| |||||||||||||||||    
T  3004 agggagttgcgaggaaggtaagtcttgaaacatgacattttaaaaacctcaaaagttccatgaactc 3070  T

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Target: scaffold0592; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 3234 - 3283
Alignment:
Q  85 agttgcgaggaaggtaagacctgaaatatggctctttaaaaaccttgaaa 134  Q
    ||||||||| |||||||| ||||||| ||||||||||||||||| |||||    
T  3234 agttgcgagaaaggtaagtcctgaaacatggctctttaaaaaccctgaaa 3283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 3310 - 3401
Alignment:
Q  85 agttgcgaggaaggtaagacc-tgaaatatggctctttaaaaaccttgaaaagttccatgaactcgcatgttgagggagttgcgaggaaggta 176  Q
    ||||| |||||||||||| || || || |||||||||||||||| | |||| ||||||||||||||  || | | ||||||| ||||||||||    
T  3310 agttgagaggaaggtaagtccctgtaacatggctctttaaaaacttcgaaa-gttccatgaactcgtctggtaaaggagttgtgaggaaggta 3401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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