View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_low_56 (Length: 243)
Name: NF2336_low_56
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_low_56 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 2969968 - 2970193
Alignment:
| Q |
18 |
caacacgtgtcaaacactggacacaccttcagtttacaggtaaattaaaattttcatatggtattaagattgtttgttacccatccaacaaggcttcttc |
117 |
Q |
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| T |
2969968 |
caacacgtgtcaaacactagacacaccttcagtttacaggtaaattaaaattttcatatggtattaagattgtttgttacccatccaacaaggcttcttc |
2970067 |
T |
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| Q |
118 |
ctccaagtcttttgtctgtagttctcattccagtgataagctgtaataggaccactccaaaagaatatacatctgttctacttgacaccttgccatattc |
217 |
Q |
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| T |
2970068 |
ctccaagtcttttgtctgtagttctcattccagtaataagctgtaataggaccactccaaaagaatatacatctgttctacttgacaccttgccatattc |
2970167 |
T |
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| Q |
218 |
tgcatattctggtgccaaatagcccc |
243 |
Q |
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| T |
2970168 |
tgcatattctggtgccaaataacccc |
2970193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 115 - 238
Target Start/End: Original strand, 2925368 - 2925491
Alignment:
| Q |
115 |
ttcctccaagtcttttgtctgtagttctcattccagtgataagctgtaataggaccactccaaaagaatatacatctgttctacttgacaccttgccata |
214 |
Q |
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| T |
2925368 |
ttcctccaagtcttttgtcagtagtcctcattccggttattagctcaacaagaaccactccaaaagaatatacatctgttttatttgatactttaccata |
2925467 |
T |
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| Q |
215 |
ttctgcatattctggtgccaaata |
238 |
Q |
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| T |
2925468 |
tgctgcatattctggggcccaata |
2925491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 234
Target Start/End: Complemental strand, 16330775 - 16330632
Alignment:
| Q |
91 |
ttgttacccatccaacaaggcttcttcctccaagtcttttgtctgtagttctcattccagtgataagctgtaataggaccactccaaaagaatatacatc |
190 |
Q |
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| T |
16330775 |
ttgttacccatcccacaagacttttgtgtccaattcttttgtctgtggtcctcattcctgttattaactgaagaagcactactccaaaggaatacacatc |
16330676 |
T |
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| Q |
191 |
tgttctacttgacaccttgccatattctgcatattctggtgcca |
234 |
Q |
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| T |
16330675 |
tgacttggttgacactttaccagattctgcatattctggtgcca |
16330632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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