View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_low_61 (Length: 242)
Name: NF2336_low_61
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_low_61 |
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Alignment Details
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 33557410 - 33557500
Alignment:
| Q |
10 |
aagaatatagcaatgttgatcattggacgtattcttcttggaattggtattggattcggaaatcaagtaagtttaattttagagtttaata |
100 |
Q |
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| T |
33557410 |
aagaatatagcaatgttgatcattggacgtattcttcttggaattggtattggatttggaaaccaagtaagtttaattttagagtttaata |
33557500 |
T |
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Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 33564627 - 33564717
Alignment:
| Q |
10 |
aagaatatagcaatgttgatcattggacgtattcttcttggaattggtattggattcggaaatcaagtaagtttaattttagagtttaata |
100 |
Q |
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| T |
33564627 |
aagaatatagcaatgttgatcattggacgtattcttcttggaattggtattggatttggaaaccaagtaagttcaattttagagtttaata |
33564717 |
T |
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