View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2336_low_62 (Length: 242)

Name: NF2336_low_62
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2336_low_62
NF2336_low_62
[»] chr8 (2 HSPs)
chr8 (1-240)||(2905096-2905335)
chr8 (1-240)||(2853064-2853305)


Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2905335 - 2905096
Alignment:
Q  1 tttcagggatgaaattagcaagaccaagctcactcgcaaatatcaatacttatcctcaaatgtttttattagagtttctgggaagtaaaaattacaataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2905335 tttcagggatgaaattagcaagaccaagctcactcgcaaatatcaatacttatcctcaaatgtttttattagagtttctgggaagtaaaaattacaataa 2905236  T
Q  101 acagtgattctttcgttcannnnnnnnnnnnnnnnnnnnnnnnngcaattatctattatcctcaactaaatgtgaaaaaattatctttaaatttgtttat 200  Q
    | |||||||||||||||||                         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2905235 aaagtgattctttcgttcattttaagcttttttactgattttttgcaattatctattatcctcaactaaatgtgaaaaaattatctttaaatttgtttat 2905136  T
Q  201 gcnnnnnnnncagattcattggttaaattatgatcctttg 240  Q
    ||        ||||||||||||||||||||||||||||||    
T  2905135 gcaaaaaaaacagattcattggttaaattatgatcctttg 2905096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2853305 - 2853064
Alignment:
Q  1 tttcagggatgaaattagcaagaccaagctcactcgcaaatatcaatacttatcctcaaatgtttttattagagtttctgggaagtaaaaattacaataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2853305 tttcagggatgaaattagcaagaccaagctcactcgcaaatatcaatacttatcctcaaatgtttttattagagtttctgggaagtaaaaattacaataa 2853206  T
Q  101 acagtgattctttcgttcannnnnnnnnnnnnnnnnnnnnnnnngcaattatctattatcctcaactaaatgtgaaaaaattatctttaaatttgtttat 200  Q
    | |||||||||||||||||                         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2853205 aaagtgattctttcgttcattttaagcttttttactgattttttgcaattatctattatcctcaactaaatgtgaaaaaattatctttaaatttgtttat 2853106  T
Q  201 gc--nnnnnnnncagattcattggttaaattatgatcctttg 240  Q
    ||          ||||||||||||||||||||||||||||||    
T  2853105 gcaaaaaaaaaacagattcattggttaaattatgatcctttg 2853064  T

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