View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_low_65 (Length: 240)
Name: NF2336_low_65
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_low_65 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 36724713 - 36724935
Alignment:
| Q |
4 |
tgctggcaaagtttcaagttcctctatttcataaactccataaaactgtggtaaagagtttactttggctcaggctaagctggtgtaaaagggtaaagac |
103 |
Q |
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| T |
36724713 |
tgctggcaaagtttcaagttcctctctttcataaactccataaaactgtggtaaagagtttactttggctcgggctaagctggtgtaaaagggtaaagac |
36724812 |
T |
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| Q |
104 |
aaccacgtccatattataattttggcgtagaattctatcaattttgtcccataaatacacatcatgccaaacctgcacaacattaggacactcgagaaga |
203 |
Q |
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| T |
36724813 |
aaccacgtccatattataattttggcgtagaattctatcaattttgtcccataaatacacatcatgccaaacctgcacaacattaggacactcgagaaga |
36724912 |
T |
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| Q |
204 |
acatgaatatcatcctcataatt |
226 |
Q |
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|||||||| ||||||||||||| |
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| T |
36724913 |
acatgaatgccatcctcataatt |
36724935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 717014 - 716809
Alignment:
| Q |
10 |
caaagtttcaagttcct-ctatttcataaactccataaaactgtggtaaagagtttactttggctcaggctaagctggtgtaaaagggtaaagacaacca |
108 |
Q |
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| T |
717014 |
caaagtttcaagttccttctcttccataaactccataaaaatgttgcaaagagttcactttggctcgagccaagctggtgcagaagggtaaagaccacca |
716915 |
T |
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| Q |
109 |
cgtccatattataattttggcgtagaatt---ctatcaattttgtcccataaatacacatcatgccaaacctgcacaacattaggacactcgagaagaac |
205 |
Q |
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| T |
716914 |
catctatattataattttcgcgaagaattatactaccaattttgtcccataaattcacatcactccaaaccaacacaacattaggacactcgagaagaac |
716815 |
T |
|
| Q |
206 |
atgaat |
211 |
Q |
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|||||| |
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| T |
716814 |
atgaat |
716809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 33 - 204
Target Start/End: Complemental strand, 14540193 - 14540018
Alignment:
| Q |
33 |
cataaactccataaaactgtggtaaagagttt---actttggctcaggctaagctggtgtaaaagggtaaagacaaccacgtccatattataattttggc |
129 |
Q |
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|||||||||||||||||| ||| |||||||| ||||| |||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||| | |
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| T |
14540193 |
cataaactccataaaactatggcaaagagttgttcacttttgctcagactaagctggtgtagaagggtaaagaccaccacgtccatattataattttgac |
14540094 |
T |
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| Q |
130 |
gtagaattctatcaa-ttttgtcccataaatacacatcatgccaaacctgcacaacattaggacactcgagaagaa |
204 |
Q |
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| T |
14540093 |
gaagaattctatcaatttttttcccgtagattcatatcatgccaaacctacacaatattaggacactcgagaagaa |
14540018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 36473646 - 36473531
Alignment:
| Q |
111 |
tccatattataattttggcgtagaattctatcaattttgtcccataaatacacatcatgccaaacctgcacaacattaggacactcgagaagaacatgaa |
210 |
Q |
| |
|
|||||||||||||||||| | || | ||||||||| | ||||| |||| |||||| ||||||||||||||||||||||||| || | || ||||||| |
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| T |
36473646 |
tccatattataattttggtgaagtactctatcaatactttcccacaaatttacatcacgccaaacctgcacaacattaggacattccaaaaacacatgaa |
36473547 |
T |
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| Q |
211 |
tatcatcctcataatt |
226 |
Q |
| |
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|| |||||||||||| |
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| T |
36473546 |
tactatcctcataatt |
36473531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 227
Target Start/End: Original strand, 29094663 - 29094773
Alignment:
| Q |
117 |
ttataattttggcgtagaattctatcaattttgtcccataaatacacatcatgccaaacctgcacaacattaggacactcgagaagaacatgaatatcat |
216 |
Q |
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|||||||||||||| | || |||| |||||||||||||||| |||||||||||| |||| ||||| |||| ||| || | |||||| ||||||| | |
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| T |
29094663 |
ttataattttggcgcataacgctatttattttgtcccataaattcacatcatgccacgcctgaacaactttagaacattcaataagaacgtgaatattgt |
29094762 |
T |
|
| Q |
217 |
cctcataattg |
227 |
Q |
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| ||||||||| |
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| T |
29094763 |
cttcataattg |
29094773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 12715536 - 12715584
Alignment:
| Q |
111 |
tccatattataattttggcgtagaattctatcaattttgtcccataaat |
159 |
Q |
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|||||||||||||||| ||| ||| ||||||||||| |||||||||||| |
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| T |
12715536 |
tccatattataatttttgcgaagagttctatcaattgtgtcccataaat |
12715584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 12776767 - 12776815
Alignment:
| Q |
111 |
tccatattataattttggcgtagaattctatcaattttgtcccataaat |
159 |
Q |
| |
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|||||||||||||||| ||| ||| ||||||||||| |||||||||||| |
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| T |
12776767 |
tccatattataatttttgcgaagagttctatcaattgtgtcccataaat |
12776815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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