View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_low_69 (Length: 239)
Name: NF2336_low_69
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_low_69 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 1135662 - 1135883
Alignment:
| Q |
18 |
gttgtcgaatcgagaattagacttatagcatgtccaaaaggttggacctgagtcatgattgaagccgttcatattcaaactaatccaaattaaaatcgca |
117 |
Q |
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| T |
1135662 |
gttgtcgactcgagaattagacttataacatgtccaaaaggttggacctgagtcatgattgaagccgttcatattcaaactaatccaaattaaaatcgca |
1135761 |
T |
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| Q |
118 |
aactaatccaaaataactcaagaccatgcaaggtccaacaaatcaaatttgtttggatgtcttttccaaaaattgctcagatttgattggggcgtctatc |
217 |
Q |
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| T |
1135762 |
aactaatccaaaataactcaaaaccatgcaaagtctaacaaatcaaatttgtttggatgtcttttccaaaaattgctcagatttgattggggcgtctatc |
1135861 |
T |
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| Q |
218 |
cagtgtcaaagtttctaattac |
239 |
Q |
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| T |
1135862 |
caatgtcaaagtttctaattac |
1135883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 52921876 - 52921920
Alignment:
| Q |
86 |
tcatattcaaactaatccaaattaaaatcgcaaactaatccaaaa |
130 |
Q |
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| T |
52921876 |
tcatatccaaaccaatccaaattgaaaccgcaaactaatccaaaa |
52921920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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