View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_low_7 (Length: 472)
Name: NF2336_low_7
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 255 - 453
Target Start/End: Original strand, 48506486 - 48506681
Alignment:
| Q |
255 |
attataacttgaactaataattggatactggcggaattaaagaatcaccggcggatgtgttttttgaaatactgtcggaattagtgaattactagcggat |
354 |
Q |
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| T |
48506486 |
attataacttgaactaataattgggtactggcggaattaaagaatcaccggcggatgtgttttttgaaataccgtcggaattagtgaattactagcggat |
48506585 |
T |
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| Q |
355 |
tctaaattcataggattactggcagattttaatgggtactggcggattgtttattttattactaacagatttcatccgccaataatacgatgccatgtg |
453 |
Q |
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| T |
48506586 |
tcttaattcaca-gattactggccgactttaatgggtactggcgaattgttta--ttattactgacagatttcatccgccagtaatacgatgccatgtg |
48506681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 40927704 - 40927543
Alignment:
| Q |
1 |
ttaacagaaaacgagagagaggatcaactgagatgcttgagcgatttaaccaaaaacgagatgaagggaaaatgattgaaaaggaaggacgatctcagat |
100 |
Q |
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| T |
40927704 |
ttaacagaaaacgagagagaggatcaactgagatgcttgagtgatttaaccaaaaatgagatgaagggaaaatgat-----------------ctcagat |
40927622 |
T |
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| Q |
101 |
aaaatgggaaaacgagatgaagaacaacggagatgcttctacacgagccctttacccagatttgtgttttgtttctttt |
179 |
Q |
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| T |
40927621 |
aaaaaggaaaaacgagatgaagaacaacggagatgcttttacacgagccctttacccagatttgtgttttgtttctttt |
40927543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 310 - 429
Target Start/End: Complemental strand, 40927497 - 40927390
Alignment:
| Q |
310 |
tgtgttttttgaaatactgtcggaattagtgaattactagcggattctaaattcataggattactggcagattttaatgggtactggcggattgtttatt |
409 |
Q |
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| T |
40927497 |
tgtgttttttgaaatactgtcggaattagtgaattactagcggattctaaattcat----------gcagactttaatgggtactggcggattgttta-- |
40927410 |
T |
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| Q |
410 |
ttattactaacagatttcat |
429 |
Q |
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| T |
40927409 |
ttactactgacagatttcat |
40927390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 40927530 - 40927485
Alignment:
| Q |
200 |
acattagatgtgtgtttctggatagctcctccttattttgttttttgaa |
248 |
Q |
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| T |
40927530 |
acattagatgtgtgtttctggatagc---tccttattgtgttttttgaa |
40927485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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