View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2336_low_74 (Length: 230)
Name: NF2336_low_74
Description: NF2336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2336_low_74 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 27991186 - 27990965
Alignment:
| Q |
7 |
ttattgaattgtgtagtggtgaaaagatgtccaatgtcaaatggtctgaatatgttgaagtgaaagggagagttaaattacatgattttgaaaaaataca |
106 |
Q |
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| T |
27991186 |
ttattgaattgtgtagtggtgaaaagatgtccaatgtcaaatggtctgaatatgttgaagtgaaagggagagttaaattacatgattttgaaaaaataca |
27991087 |
T |
|
| Q |
107 |
ttcaagaacttcctcgctcacacaagaaaagattcatggtaagaaaatactgttattctatttatttatttactaaaatgtcttcgagttgttgtactta |
206 |
Q |
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| T |
27991086 |
ttcaagaaattcctcgctcacgcaagaaacgattcatggtaagaaaatattgttattctatttatttatttattgaaatgtcttcgagttgttgtactta |
27990987 |
T |
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| Q |
207 |
caatctactccgtaatctctac |
228 |
Q |
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||||||||||||||||| |||| |
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| T |
27990986 |
caatctactccgtaatccctac |
27990965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 7 - 213
Target Start/End: Complemental strand, 28001238 - 28001036
Alignment:
| Q |
7 |
ttattgaattgtgtagtggtgaaaagatgtccaatgtcaaatggtctgaatatgttgaagtgaaagggagagttaaattacatgattttgaaaaaataca |
106 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
28001238 |
ttattgaattgtgtagtgctgaaaagatgtccaa---caaatggtccaaatatgttgaagtgaaagggagagttaaattacataattttgaaaaa-taca |
28001143 |
T |
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| Q |
107 |
ttcaagaacttcctcgctcacacaagaaaagattcatggtaagaaaatactgttattctatttatttatttactaaaatgtcttcgagttgttgtactta |
206 |
Q |
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| T |
28001142 |
ttcaagaacttcctcgctcacgcaagaattgattgatggtaagaaaatattgttattctatttatttatttactaaaatatcttcaagttgttgtgctta |
28001043 |
T |
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| Q |
207 |
caatcta |
213 |
Q |
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||||||| |
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| T |
28001042 |
caatcta |
28001036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 10501487 - 10501606
Alignment:
| Q |
7 |
ttattgaattgtgtagtggtgaaaagatgtccaatgtcaaatggtctgaatatgttgaagtgaaagggagagttaaattacatgattttgaaaaaataca |
106 |
Q |
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||||| |||||||||| |||||||||||| | | ||||||||||||||||| | |||| || ||||||| ||| |||||||||||||||| ||||||||| |
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| T |
10501487 |
ttattcaattgtgtagcggtgaaaagatgcctactgtcaaatggtctgaatctattgaggtaaaagggaaagtcaaattacatgattttg-aaaaataca |
10501585 |
T |
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| Q |
107 |
ttcaagaacttcctcgctcac |
127 |
Q |
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| T |
10501586 |
ttcaagaacttcctcgctcac |
10501606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 24403421 - 24403589
Alignment:
| Q |
7 |
ttattgaattgtgtagtggtgaaaagatgtccaatgtcaaatggtctgaatatgttgaagtgaaagggagagttaaattacatgattttgaaaaaataca |
106 |
Q |
| |
|
||||| |||||| |||||| ||||||||| | |||||||||||||| || | ||| ||||||||||| || |||||||| ||||||| ||||||||| |
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| T |
24403421 |
ttattcaattgtatagtggcgaaaagatgccggatgtcaaatggtctcgatctattgtagtgaaagggactgtcaaattacaagattttg-aaaaataca |
24403519 |
T |
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| Q |
107 |
ttcaagaacttcctcgctcacacaagaaaagattcatggtaagaaaatactgttattctatttatttatt |
176 |
Q |
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||||||||||||||| |||| ||| ||| | | ||||||||||| | |||||| |||||||||||| |
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|
| T |
24403520 |
ttcaagaacttcctctctcatgcaacaaagaacttatggtaagaaattctcgttattatatttatttatt |
24403589 |
T |
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