View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2337-Insertion-10 (Length: 258)
Name: NF2337-Insertion-10
Description: NF2337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2337-Insertion-10 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 37896377 - 37896148
Alignment:
| Q |
8 |
ttaacattatgtcatgcaactgtgaagagagaggttatgaagggggaagatggttttgtgaatggtgttaaagtaattgaaagggcaataagtgaaatga |
107 |
Q |
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| T |
37896377 |
ttaacattatgtcatgcaactgtgaagagaaaggttatgaagggggaagatggttttgtgaatggtgttaaagaaattgaaagggcaataagtgaaatga |
37896278 |
T |
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| Q |
108 |
aaaatgaaccttttaaagatgtaggagaatggagggatacatttaagaagatgtatgaggtgggaagtgtattgttggtaacaggttcacctaagtttaa |
207 |
Q |
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| T |
37896277 |
aaaatgaaccttttaaagatgtaggagaatggagggatacatttaagaagatgtatgaggtgggaagtgtattgttggtaacaggatcacctaagtttaa |
37896178 |
T |
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| Q |
208 |
tgtttatgagacagattttggatttggtag |
237 |
Q |
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| T |
37896177 |
tgtttatgagactgattttggatttggtag |
37896148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 37958826 - 37959051
Alignment:
| Q |
9 |
taacattatgtcatgcaactgtgaagagagaggttatgaagggggaagatggttttgtgaatggtgttaaagtaattgaaagggcaataagtgaaatgaa |
108 |
Q |
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| T |
37958826 |
taacattatgtcatgcaactatgaagagaaaggatatgaagggggaagatggttatgtgaatgctgttaaggtaattgaaagggtaataagtgaaatgaa |
37958925 |
T |
|
| Q |
109 |
aaatgaaccttttaaagatgtaggagaatggagggatacatttaagaagatgtatgaggtgggaagtgtattgttggtaacaggttcacctaagtttaat |
208 |
Q |
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| T |
37958926 |
aaatgaaccttttaaagatatgggagaatggagggatagatttaaaaagatgtatgagttgggaagtgtgttgttggtaacaggttcgcctaagtttaat |
37959025 |
T |
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| Q |
209 |
gtttatgagacagattttggatttgg |
234 |
Q |
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| T |
37959026 |
gtttatgagactgattttggatttgg |
37959051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 234
Target Start/End: Original strand, 37953126 - 37953307
Alignment:
| Q |
53 |
gaagatggttttgtgaatggtgttaaagtaattgaaagggcaataagtgaaatgaaaaatgaaccttttaaagatgtaggagaatggagggatacattta |
152 |
Q |
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||||||||||||||||||| |||||| |||||||| | |||||||| ||| ||||||||||||||| ||||||||| | | ||||| | | || || |
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| T |
37953126 |
gaagatggttttgtgaatgctgttaaggtaattgagaaggcaataactgagatgaaaaatgaacctcttaaagatgcaacaaaatgggaaggttcagcta |
37953225 |
T |
|
| Q |
153 |
agaagatgtatgaggtgggaagtgtattgttggtaacaggttcacctaagtttaatgtttatgagacagattttggatttgg |
234 |
Q |
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| T |
37953226 |
aaaagataggtgagtttggaaatttgttatttgtaagggggtcacctaagtttaatgtttatgagactgattttggatttgg |
37953307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 39711977 - 39711937
Alignment:
| Q |
194 |
tcacctaagtttaatgtttatgagacagattttggatttgg |
234 |
Q |
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| T |
39711977 |
tcacctaagtttaatgtttatgagaccaattttggatttgg |
39711937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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