View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2337-Insertion-3 (Length: 610)
Name: NF2337-Insertion-3
Description: NF2337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2337-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 7e-63; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 10 - 322
Target Start/End: Complemental strand, 33856157 - 33855852
Alignment:
| Q |
10 |
agtaacatctctcaatgcaaagaactaaacctatattttaatagaattacaaatactaaaaattacaactatactcatttcctccgtgatctcagattca |
109 |
Q |
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| T |
33856157 |
agtaacatctctcaatgcaaagaactaaacctatattttaatagaattgcaaatattaaaaattactactatactcatttcttccgtgagctcagattca |
33856058 |
T |
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| Q |
110 |
atttacatagcaggtggtacgggtactttcctcataaag-aagacatgaaaaatgaaccctacgataaaaagttgcatatatccccaatttcatcacacc |
208 |
Q |
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| T |
33856057 |
atttatacaaca----------gtactttcctcctaaagaaaaacattaaaaatgaaccct--gataaaatattgtatatatcctcaatttcctcacaaa |
33855970 |
T |
|
| Q |
209 |
aatactataagataacacttcaaagaaaac----aaaccaaagagaaagtttctagaagtttcccaatccttgcttcttctttttccaccaataaggcaa |
304 |
Q |
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| T |
33855969 |
gaaactataagataacacttcaaataaagcaattaaaccaaagggaaagtttctacaagttttccaatccttgcttctttcttctccaccaataagataa |
33855870 |
T |
|
| Q |
305 |
aaaagaccaacatgcgaa |
322 |
Q |
| |
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| T |
33855869 |
gaaagaccaacatgcgaa |
33855852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 338 - 384
Target Start/End: Complemental strand, 33855473 - 33855427
Alignment:
| Q |
338 |
agggttgccttaataaacacacaactattaacatataaatagcctgt |
384 |
Q |
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| T |
33855473 |
agggttgccttaataaatacacaactattaacatataaatagcctgt |
33855427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 2e-60; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 10 - 322
Target Start/End: Complemental strand, 26099220 - 26098915
Alignment:
| Q |
10 |
agtaacatctctcaatgcaaagaactaaacctatattttaatagaattacaaatactaaaaattacaactatactcatttcctccgtgatctcagattca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||| ||||||| |||||||||| |
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| T |
26099220 |
agtaacatctctcaatgcaaagaactaaacctatattttaatagaattgaaaatattaaaaattactactatactcatttcttccgtgagctcagattca |
26099121 |
T |
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| Q |
110 |
atttacatagcaggtggtacgggtactttcctcataaag-aagacatgaaaaatgaaccctacgataaaaagttgcatatatccccaatttcatcacacc |
208 |
Q |
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| T |
26099120 |
atttacataaca----------gtactttcctcctgaagaaaaacattaaaaatgaaccct--gataaaatattgtatatatcctcaatttcctcacaaa |
26099033 |
T |
|
| Q |
209 |
aatactataagataacacttcaaagaaaac----aaaccaaagagaaagtttctagaagtttcccaatccttgcttcttctttttccaccaataaggcaa |
304 |
Q |
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| ||||||||||||||||||||| ||| | ||||||||| ||||||||||| |||||| | |||||||||||||| || |||||||||||| || |
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| T |
26099032 |
gaaactataagataacacttcaaataaagcaattaaaccaaagggaaagtttctacaagttttcaaatccttgcttctttcttctccaccaataagataa |
26098933 |
T |
|
| Q |
305 |
aaaagaccaacatgcgaa |
322 |
Q |
| |
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||||||||||||||||| |
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| T |
26098932 |
gaaagaccaacatgcgaa |
26098915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 25999428 - 25999320
Alignment:
| Q |
10 |
agtaacatctctcaatgcaaagaactaaacctatattttaatagaattacaaatactaaaaattacaactatactcatttcctccgtgatctcagattca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| ||||||| |||||||||| |
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| T |
25999428 |
agtaacatctctcaatgcaaagaactaaacctatattttaatagaattgcaaatattaaaaattactactatactcatttcttccgtgagctcagattca |
25999329 |
T |
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| Q |
110 |
atttacata |
118 |
Q |
| |
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||||||||| |
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| T |
25999328 |
atttacata |
25999320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 338 - 384
Target Start/End: Complemental strand, 26098334 - 26098288
Alignment:
| Q |
338 |
agggttgccttaataaacacacaactattaacatataaatagcctgt |
384 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26098334 |
agggttgccttaataaatacacaactattaacatataaatagcctgt |
26098288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 338 - 384
Target Start/End: Complemental strand, 25998809 - 25998763
Alignment:
| Q |
338 |
agggttgccttaataaacacacaactattaacatataaatagcctgt |
384 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
25998809 |
agggttgccttaataaatacacaagtattaacatataaatagcctgt |
25998763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 25999245 - 25999184
Alignment:
| Q |
261 |
aagtttcccaatccttgcttcttctttttccaccaataaggcaaaaaagaccaacatgcgaa |
322 |
Q |
| |
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|||||| |||||||||||||||| || |||||||||||| || ||||||||||||||||| |
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| T |
25999245 |
aagttttccaatccttgcttctttcttctccaccaataagataagaaagaccaacatgcgaa |
25999184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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