View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2337-Insertion-4 (Length: 595)
Name: NF2337-Insertion-4
Description: NF2337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2337-Insertion-4 |
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| [»] chr2 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 97 - 438
Target Start/End: Original strand, 34824110 - 34824449
Alignment:
| Q |
97 |
ggatggaagtgacttcaccgatcttaatggtggaagcatcggtgagatgaaaaggggtatttggaggaacgggtatgttgtctaaaacggtaccgtttgg |
196 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||| ||| |||||| |||||||| ||||| | |
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| T |
34824110 |
ggatggaagtaacttcaccgatcttaatggtggaaccatcgctgagatgaaaaggagtatttggaggaacaggttcgttgtccaaaacggtgccgttaga |
34824209 |
T |
|
| Q |
197 |
ggaatcgagatctgtgagaatccaattaccggaatcgaaatggatagtgaggtgtttggtggaaatacctggatctttgatggggaggttgttgccgcgg |
296 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34824210 |
ggaatcgagatctgtgagaatccaattaccggaatcgaaatggatagtgaggtgtttggtggaaatacctggatctttgatggggaggttgttgccgcgg |
34824309 |
T |
|
| Q |
297 |
attacccgaccgattttggtggtggatccgggttcaaattggtgggtttcgccgttgcgtggaccggcgaggatttgaagtgtgagagatggagcctctt |
396 |
Q |
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|| || |||||||||||| ||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |||| || | |||| |
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| T |
34824310 |
atgacacgaccgattttgacggtggatccaggttcgaattggtgggtttctccgttgcgtggaccggcgaggatttggagtgtaagagtgggtgagtctt |
34824409 |
T |
|
| Q |
397 |
gttgttcttccattttagtgatagtgagagagtgagtttgga |
438 |
Q |
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|||||||||||||||||||| || ||| ||||||||||||| |
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| T |
34824410 |
gttgttcttccattttagtg--agagagtgagtgagtttgga |
34824449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 592
Target Start/End: Original strand, 21261065 - 21261107
Alignment:
| Q |
550 |
atggaatggaatggagtggaacaaaaatttcattccattgttt |
592 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
21261065 |
atggaatggaatggagtggaacaaagattccattccattgttt |
21261107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 35292835 - 35292797
Alignment:
| Q |
499 |
tgtttggataatctaaaactaaaggagcggaacagaatg |
537 |
Q |
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|||||||||||||||||||||| |||||||||| ||||| |
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| T |
35292835 |
tgtttggataatctaaaactaacggagcggaacggaatg |
35292797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 34826473 - 34826533
Alignment:
| Q |
105 |
gtgacttcaccgatcttaatggtggaagcatcggtgagatgaaaaggggtatttggaggaa |
165 |
Q |
| |
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|||||||||||||||||||||||||| |||| ||||| ||||| ||||||||||||| |
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| T |
34826473 |
gtgacttcaccgatcttaatggtggatccatcacggagataaaaagaagtatttggaggaa |
34826533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 97 - 417
Target Start/End: Original strand, 28946747 - 28947067
Alignment:
| Q |
97 |
ggatggaagtgacttcaccgatcttaatggtggaagcatcggtgagatgaaaaggggtatttggaggaacgggtatgttgtctaaaacggtaccgtttgg |
196 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| ||||| |||||||||||| ||||| |||||||| ||| |||||| |||||||| ||||| | |
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| T |
28946747 |
ggatggaagtaacttcaccgatcttaatggtggaaccatcgcagagatgaaaaggagtattcggaggaacaggttcgttgtccaaaacggtgccgttaga |
28946846 |
T |
|
| Q |
197 |
ggaatcgagatctgtgagaatccaattaccggaatcgaaatggatagtgaggtgtttggtggaaatacctggatctttgatggggaggttgttgccgcgg |
296 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28946847 |
ggaatcgagatctgtgagaatccaattaccggaatcgaaatggatagtgaggtgtttggtggaaatacctggatctttgatggggaggttgttgccgcgg |
28946946 |
T |
|
| Q |
297 |
attacccgaccgattttggtggtggatccgggttcaaattggtgggtttcgccgttgcgtggaccggcgaggatttgaagtgtgagagatggagcctctt |
396 |
Q |
| |
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|| || |||||||||||| ||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||| || | |||| |
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| T |
28946947 |
atgacacgaccgattttgacggtggatccaggttcgaattggtgggtttctccgttgcgtggaccggcgaggatttggagtgtgagagtgggtgggtctt |
28947046 |
T |
|
| Q |
397 |
gttgttcttccattttagtga |
417 |
Q |
| |
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||||||||||||||||||||| |
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| T |
28947047 |
gttgttcttccattttagtga |
28947067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 89 - 438
Target Start/End: Complemental strand, 42232025 - 42231693
Alignment:
| Q |
89 |
attgactcggatggaagtgacttcaccgatcttaatggtggaagcatcggtgagatgaaaaggggtatttggaggaacgggtatgttgtctaaaacggta |
188 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
42232025 |
attgactcggatggaagtgacttcaccgatcttaatggtggaagcataggtgagatgaaaaggggtatttggaggaacgggtttgttatctaaaacggtg |
42231926 |
T |
|
| Q |
189 |
ccgtttggggaatcgagatctgtgagaatccaattaccg---gaatcgaaatggatagtgaggtgtttggtggaaatacctggatctttgatggggaggt |
285 |
Q |
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||||||| ||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42231925 |
ccgtttgaggaatcgagatatgtgagaatccaattacaggacgaatcgaaatggatagtgaggtgtttggtggaaatacctggatctttgatggggaggt |
42231826 |
T |
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| Q |
286 |
tgttgccgcggattacccgaccgattttggtggtggatccgggttcaaattggtgggtttcgccgttgcgtggaccggcgaggatttgaagtgtgagaga |
385 |
Q |
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|||||||||| || ||||||||||||||| |||||||||| ||||| |||||||||||||||||||| |||||||||| |||||||||| |
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| T |
42231825 |
tgttgccgcgtatgacccgaccgattttgatggtggatccaggttcgaattggtgggtttcgccgtt----------gcgaggatttcaagtgtgaga-- |
42231738 |
T |
|
| Q |
386 |
tggagcctcttgttgttcttccattttagtgatagtgagagagtgagtttgga |
438 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42231737 |
--------cttgttgttcttccattttactgatagtgagagagtgagtttgga |
42231693 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 499 - 595
Target Start/End: Original strand, 42028570 - 42028661
Alignment:
| Q |
499 |
tgtttggataatctaaaactaaaggagcggaacagaatgaggcagcatggaatggaatggaatggagtggaacaaaaatttcattccattgtttgga |
595 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| ||||| || |||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
42028570 |
tgtttggataacctaaaactaacggagcggaaccgaatggagc-----ggaatggaatggaatggagtggaacaaagatttcattccattgtttgga |
42028661 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 547 - 595
Target Start/End: Complemental strand, 28219825 - 28219777
Alignment:
| Q |
547 |
ggaatggaatggaatggagtggaacaaaaatttcattccattgtttgga |
595 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28219825 |
ggaatggaatggaatggagtggaacaaagatttcattccattgtttgga |
28219777 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 499 - 595
Target Start/End: Complemental strand, 4944613 - 4944523
Alignment:
| Q |
499 |
tgtttggataatctaaaactaaaggagcggaacagaatgaggcagcatggaatggaatggaatggagtggaacaaaaatttcattccattgtttgga |
595 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| ||||||| |||||| ||||||| ||||||||||||| ||| |||||||||||||||| |
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|
| T |
4944613 |
tgtttggataacctaaaactaacggagcggaacggaatgagc------ggaatgaaatggaacggagtggaacaaagattccattccattgtttgga |
4944523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 537
Target Start/End: Complemental strand, 11618033 - 11617987
Alignment:
| Q |
491 |
taagactttgtttggataatctaaaactaaaggagcggaacagaatg |
537 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
11618033 |
taaggctttgtttggataatctaaaactaacggagcgaaacagaatg |
11617987 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 552 - 595
Target Start/End: Complemental strand, 8099811 - 8099768
Alignment:
| Q |
552 |
ggaatggaatggagtggaacaaaaatttcattccattgtttgga |
595 |
Q |
| |
|
|||| |||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
8099811 |
ggaacggaacggagtggaacaaagatttcattccattgtttgga |
8099768 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 547 - 595
Target Start/End: Complemental strand, 15582394 - 15582346
Alignment:
| Q |
547 |
ggaatggaatggaatggagtggaacaaaaatttcattccattgtttgga |
595 |
Q |
| |
|
|||| ||||||||||||| |||| ||||||| |||||||||||||||| |
|
|
| T |
15582394 |
ggaagggaatggaatggaacggaataaaaattccattccattgtttgga |
15582346 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 545 - 595
Target Start/End: Complemental strand, 57768 - 57718
Alignment:
| Q |
545 |
atggaatggaatggaatggagtggaacaaaaatttcattccattgtttgga |
595 |
Q |
| |
|
||||||||||| ||||| || ||||| ||| |||||||||||||||||||| |
|
|
| T |
57768 |
atggaatggaacggaattgaatggaataaagatttcattccattgtttgga |
57718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 547 - 595
Target Start/End: Original strand, 36656799 - 36656847
Alignment:
| Q |
547 |
ggaatggaatggaatggagtggaacaaaaatttcattccattgtttgga |
595 |
Q |
| |
|
|||||| || |||||||| ||||||||||||| |||||||||| ||||| |
|
|
| T |
36656799 |
ggaatgtaacggaatggaatggaacaaaaattacattccattgcttgga |
36656847 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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