View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2337-Insertion-5 (Length: 552)
Name: NF2337-Insertion-5
Description: NF2337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2337-Insertion-5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 2423386 - 2423141
Alignment:
| Q |
7 |
aagttgcatattgaagaagttcaaaaagcatgaagatgaaacagatccagttctttactttttctctcaagtggatttgaaacttgtttgtagagtgttg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2423386 |
aagttgcatattgaagaagttcaaaaagcatgaagatgaaacagatccagttctttactttttctctcaagtggatttgaaacttgtttgtagagtgttg |
2423287 |
T |
|
| Q |
107 |
aatatgtcaaggataacaactgatcaactagcatggtgtcgtagtaaactaaacaagatcaattttgtaaaccgtaggatacatgtagaaccatcattct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2423286 |
aatatgtcaaggataacaactgatcaactagcatggtgtcgtagtaaactaaacaagatcaattttgtaaaccgtaggatacatgtagaaccatcattct |
2423187 |
T |
|
| Q |
207 |
tactttttcctaat----taatgattagattaattgctagattagt |
248 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2423186 |
tactttttcctaattaattaatgattagattaattgctagattagt |
2423141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 265 - 447
Target Start/End: Complemental strand, 2423153 - 2422971
Alignment:
| Q |
265 |
ttgctagattagtatatatgatcctttacatttaggtggtcattattgaaatagtcaagaattttggcctatgtctaactagttgcttggcctaagttgt |
364 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2423153 |
ttgctagattagtatatatgatcctttgcatttaggtggtcataattgaaatagtcaagatttttggcctatgtctaactagttgcttggcctaagttgt |
2423054 |
T |
|
| Q |
365 |
acaatttccatgtggtgccatgcaaatattttcagataatattgagatttaaatatgattttgcttctgtcacatgtctattg |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2423053 |
acaatttccatgtggtgccatgcaaatattttcagataatattgagatttaaatatgattttgcttctgtcacatgtctattg |
2422971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 488 - 552
Target Start/End: Complemental strand, 2422930 - 2422866
Alignment:
| Q |
488 |
gaagggatcgttgtagaaatatttattcatttttgtcttcgttatttagtacaaaaaccacgctc |
552 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2422930 |
gaagtgatcgttgtagaaatatttattcatttttgtcttcgttatttagtacaaaaaccacgctc |
2422866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University