View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2337-Insertion-6 (Length: 535)

Name: NF2337-Insertion-6
Description: NF2337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2337-Insertion-6
NF2337-Insertion-6
[»] chr3 (10 HSPs)
chr3 (11-351)||(24919638-24919975)
chr3 (6-116)||(24982134-24982244)
chr3 (6-266)||(25085126-25085369)
chr3 (6-119)||(24497240-24497353)
chr3 (11-184)||(24923378-24923549)
chr3 (11-123)||(31825534-31825646)
chr3 (402-500)||(24919494-24919592)
chr3 (8-115)||(21584582-21584689)
chr3 (315-372)||(22126255-22126312)
chr3 (78-115)||(14858633-14858670)
[»] chr7 (2 HSPs)
chr7 (8-112)||(10575477-10575581)
chr7 (8-107)||(39954838-39954937)
[»] chr2 (1 HSPs)
chr2 (8-84)||(41027662-41027738)
[»] chr8 (1 HSPs)
chr8 (8-115)||(14261017-14261124)
[»] chr4 (2 HSPs)
chr4 (14-90)||(22898649-22898725)
chr4 (14-90)||(22950317-22950393)


Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 351
Target Start/End: Complemental strand, 24919975 - 24919638
Alignment:
Q  11 acatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaa 110  Q
    ||||||||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||| ||||||     
T  24919975 acatacactgagcacgctaggaggaagacagtgacagccatggatgtcgtctatgctttgaagaggcagggaagaaccctctatggattcggaggttgat 24919876  T
Q  111 gaagaaaaagaagtagaagcactctttagtttattttt-attttcttttgccttaagactttaatttgaatatgcaattgcaccatagaaagtttcaatg 209  Q
    |  ||| | |||| ||||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  24919875 gctgaagatgaagaagaagcact-tttagtttattttttattttattttgcctta-gactttaatttgaatatgcaattgcaccttagaaagtttcaatg 24919778  T
Q  210 atgtttagggtaatatgttataagtgattctcgagtagatcgaaactttttcagtttcagaaatattgaaatctaatgaaaagtagtacttcgattagtt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  24919777 atgtttagggtaatatgttataagtgattctcgagtagatcgaaactttttcagtttcagaaatattgaaatctaatgaaaagtagtacttcgattaatt 24919678  T
Q  310 tacagagttatgtgcaagtgttaatgaatttagattaacact 351  Q
    |||  |||||||||||||| ||||||||||||||||||||||    
T  24919677 tac--agttatgtgcaagttttaatgaatttagattaacact 24919638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 24982134 - 24982244
Alignment:
Q  6 cagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtgg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24982134 cagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtgg 24982233  T
Q  106 ttgaagaagaa 116  Q
    |||||||||||    
T  24982234 ttgaagaagaa 24982244  T

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Target: chr3; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 6 - 266
Target Start/End: Original strand, 25085126 - 25085369
Alignment:
Q  6 cagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtgg 105  Q
    |||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||    
T  25085126 cagttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacagggaagaaccctctatggttttggagg 25085225  T
Q  106 ttgaagaagaaaaagaagtagaagcactctttagtttattt-ttattttcttttgccttaagactttaatttgaatatgcaattgcaccatagaaagttt 204  Q
    ||||||||||      || |||| ||||||||||||||||| ||||||||||||||||| |||||            || ||||||||  ||||||| ||    
T  25085226 ttgaagaaga-----cagaagaaacactctttagtttatttgttattttcttttgcctt-agact------------tgtaattgcacattagaaagctt 25085307  T
Q  205 caatgatgtttagggtaatatgttataagtgattctcgagtagatcgaaactttttcagttt 266  Q
    || |||||||||||||||||||| | || |||||||| | ||||||||| ||| ||||||||    
T  25085308 cattgatgtttagggtaatatgtgacaattgattctcaattagatcgaagcttattcagttt 25085369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 24497353 - 24497240
Alignment:
Q  6 cagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtgg 105  Q
    |||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  24497353 cagttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggttttggagg 24497254  T
Q  106 ttgaagaagaaaaa 119  Q
    |||| |||||||||    
T  24497253 ttgatgaagaaaaa 24497240  T

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Target: chr3; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 24923549 - 24923378
Alignment:
Q  11 acatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaa 110  Q
    ||||||||||||||||| ||||||||||| || || |||||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||       
T  24923549 acatacactgagcacgcaaggaggaagacagtgacagccatggatgttgtctatgctttgaagagacagggaagaaccctctatggatttggaggtt--- 24923453  T
Q  111 gaagaaaaagaagtagaagcactctttagtttatttttattttcttttgccttaagactt-taatttgaatatgc 184  Q
    |||||| | |||| |||| ||||||||||||||||||| || |||||| |||| ||  || ||||||||||||||    
T  24923452 gaagaatatgaagaagaaacactctttagtttattttttttatctttttcctttagctttgtaatttgaatatgc 24923378  T

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Target: chr3; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 31825646 - 31825534
Alignment:
Q  11 acatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaa 110  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||     
T  31825646 acatacactgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggaggttgat 31825547  T
Q  111 gaagaaaaagaag 123  Q
    |||||| ||||||    
T  31825546 gaagaagaagaag 31825534  T

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Target: chr3; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 402 - 500
Target Start/End: Complemental strand, 24919592 - 24919494
Alignment:
Q  402 aaaacaagtacttgaattgaaactaaccaaaatcatgataaaaaattttgttgtgattcatcaaatttattataggcatactaagcatgatttacataa 500  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| || |||||||||||    
T  24919592 aaaacaaggacttgaattgaaactaaccaaaatcatgatagaaaattgtgttgtgattcatcaaatttattataggcatactaaacaggatttacataa 24919494  T

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Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 21584689 - 21584582
Alignment:
Q  8 gttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggtt 107  Q
    ||||| ||||||||||| || |||||||||||||| || || ||||||||||| |||||||||||||| ||||||||||| || ||||| ||||| ||||    
T  21584689 gttacgtacactgagcatgcaaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgctttatggattcggaggtt 21584590  T
Q  108 gaagaaga 115  Q
    ||||||||    
T  21584589 gaagaaga 21584582  T

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Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 315 - 372
Target Start/End: Complemental strand, 22126312 - 22126255
Alignment:
Q  315 agttatgtgcaagtgttaatgaatttagattaacactgaatttgacaccacgttaaca 372  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||    
T  22126312 agttatgtgcaagtattaatgtatttagattaacactgaatttgacaccacattaaca 22126255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 14858670 - 14858633
Alignment:
Q  78 aaggaagaaccctctatggtttcggtggttgaagaaga 115  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  14858670 aaggaagaaccctctacggttttggtggttgaagaaga 14858633  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 10575477 - 10575581
Alignment:
Q  8 gttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggtt 107  Q
    ||||| ||||||||||| || |||||||| ||||| || || ||||||||||| || ||  | |||||||||||||||||||||||||||||||||||||    
T  10575477 gttacttacactgagcatgcgaggaggaaaactgtgactgctatggatgttgtttacgcgcttaagagacaaggaagaaccctctatggtttcggtggtt 10575576  T
Q  108 gaaga 112  Q
    |||||    
T  10575577 gaaga 10575581  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 39954937 - 39954838
Alignment:
Q  8 gttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggtt 107  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| | ||||| || ||||| || ||||| |||||||||||||    
T  39954937 gttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggtttcggtggtt 39954838  T

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Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 41027662 - 41027738
Alignment:
Q  8 gttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 84  Q
    ||||| ||||| |||||||||||||| ||||||||||| || ||||||||||| ||||| |||||||||||||||||    
T  41027662 gttacttacacagagcacgctaggagaaagactgttactgctatggatgttgtttatgcattgaagagacaaggaag 41027738  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 14261124 - 14261017
Alignment:
Q  8 gttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggtt 107  Q
    ||||| || ||||| || || ||||||||||| ||||| || ||||||||||| ||||| ||||||||||||||||| ||  | ||||||||||| ||||    
T  14261124 gttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggactttgtatggtttcggaggtt 14261025  T
Q  108 gaagaaga 115  Q
    ||||||||    
T  14261024 gaagaaga 14261017  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 22898649 - 22898725
Alignment:
Q  14 tacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccct 90  Q
    ||||||||||||||||| |||||||| ||||| || |||||||| || |||||  | |||||||| |||||||||||    
T  22898649 tacactgagcacgctagaaggaagacggttactgctatggatgtggtttatgccctcaagagacagggaagaaccct 22898725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 22950317 - 22950393
Alignment:
Q  14 tacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccct 90  Q
    ||||||||||||||||| |||||||| ||||| || |||||||| || |||||  | |||||||| |||||||||||    
T  22950317 tacactgagcacgctagaaggaagacggttactgctatggatgtggtttatgccctcaagagacagggaagaaccct 22950393  T

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