View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2337-Insertion-8 (Length: 377)
Name: NF2337-Insertion-8
Description: NF2337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2337-Insertion-8 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 6 - 377
Target Start/End: Complemental strand, 12850308 - 12849934
Alignment:
| Q |
6 |
catttcatttctacttagc---ttctaatcaaatgtcaactatactcacacaaatattcatctacccctaactgatcgattgatgaataattatggaaaa |
102 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
12850308 |
catttcatttctacttagcagcttctaatcaaatgtcaactatactcgcacaaatattcatctactcctaactgatcgattgatggataattatggaaaa |
12850209 |
T |
|
| Q |
103 |
tagtgaacgtataatcaatcacaatcaagaacacagtgtggatagataatttgattagtacatactgcataatatggaaatagctacactactttcaaat |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12850208 |
tagtgaacgtataatcaatcacaatcaagaacacagtgtggatagataatttgattagtacatactgcataatatggaaatagctacactactttcaaat |
12850109 |
T |
|
| Q |
203 |
caccattttagcaagaaggnnnnnnngaaacaagctattgaagcataaacagtttcatcacctaagaaatttaaaacgaaaatcatttaactcatactag |
302 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12850108 |
caccattttagcaagaaggaaaaaaagaaacaagctattgaagcataaacagtttcatcacctaagaaatttaaaacgaaaatcatttaactcatactag |
12850009 |
T |
|
| Q |
303 |
ttgtgatgtaatggatgaactgtgaaagattctgaatatgcatttttcatcactcagtaaacctccaagctttga |
377 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12850008 |
ttgtgatgtaatggatgaactgtgaaatattctgaatatgcatttttcatcactcagtaaacctccaagctttga |
12849934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University