View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2337-Insertion-9 (Length: 330)
Name: NF2337-Insertion-9
Description: NF2337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2337-Insertion-9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 6 - 330
Target Start/End: Original strand, 38324744 - 38325068
Alignment:
| Q |
6 |
cagtttatatgtggacaagacatgcacatggcattgtgaataacacttttaattatttggatgcaccagaaattgtggctggtattgctaagtataatcc |
105 |
Q |
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| T |
38324744 |
cagtttatatgtggacaagacatgcacatggcattgtgaataacacttttaattatttggatgcaccagaagttgtggctggtattgctaagtataatcc |
38324843 |
T |
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| Q |
106 |
ttcaattttgaaaatgactcacattgaggcttttgatgctgttgtgaacgaacttggtgctcgaaatgttaaagttttgcttgataatcatgttagtgag |
205 |
Q |
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| T |
38324844 |
ttcaattttgaaaatgactcacattgaggcttttgatgctgttgtgaacgaacttggtgctcgaaatgttaaagtgttgcttgataatcatgttagtgag |
38324943 |
T |
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| Q |
206 |
cctaaatggtgttgtaatgacgacgacgacaatggtttctttcatgatcaacactttgatcctcaagaatggattcatggacttaccttggcagccaagc |
305 |
Q |
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| T |
38324944 |
cctaaatggtgttgtaatgacgacgacgacaatggtttctttcatgatcaacactttgatcctcaagaatggattcatggacttaccttggcagccaagc |
38325043 |
T |
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| Q |
306 |
acttttatggacatcaacctgtaag |
330 |
Q |
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| T |
38325044 |
acttttatggacatcaacctgtaag |
38325068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 9 - 328
Target Start/End: Original strand, 10764235 - 10764554
Alignment:
| Q |
9 |
tttatatgtggacaagacatgcacatggcattgtgaataacacttttaattatttggatgcaccagaaattgtggctggtattgctaagtataatccttc |
108 |
Q |
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| T |
10764235 |
tttatatgtggacaagatatcaaaatggcattgtgaatgatacttttaatgatttggatgtgcctgagattgttgaaggtattgctaacaataatccttc |
10764334 |
T |
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| Q |
109 |
aattttgaaaatgactcacattgaggcttttgatgctgttgtgaacgaacttggtgctcgaaatgttaaagttttgcttgataatcatgttagtgagcct |
208 |
Q |
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| T |
10764335 |
tgttttgaaaatgactcatattgaggcttttgatgctgttgttaaagaacttggtgatcagaatgttagggttttgcttgataatcatgttagtgagcct |
10764434 |
T |
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| Q |
209 |
aaatggtgttgtaatgacgacgacgacaatggtttctttcatgatcaacactttgatcctcaagaatggattcatggacttaccttggcagccaagcact |
308 |
Q |
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| T |
10764435 |
aagtggtgttgtcatgatgatgatgagaatggtttctttcatgatagacattttgatcctcaggaatggattcatggacttactttggcagctaaacact |
10764534 |
T |
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| Q |
309 |
tttatggacatcaacctgta |
328 |
Q |
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| T |
10764535 |
ttgaaggacatcatcctgta |
10764554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 11949820 - 11949701
Alignment:
| Q |
16 |
gtggacaagacatgcacatggcattgtgaataacacttttaattatttggatgcaccagaaattgtggctggtattgctaagtataatccttcaattttg |
115 |
Q |
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| T |
11949820 |
gtggacaagacatgaacatgacattgtgaatgatacttttaatgctttggatgcaccttaggttatggaaggtattgctaagtataat-cttctactttg |
11949722 |
T |
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| Q |
116 |
aaaatgactcacattgaggct |
136 |
Q |
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| T |
11949721 |
aaaatgacccatactgaggct |
11949701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 297
Target Start/End: Original strand, 5586436 - 5586722
Alignment:
| Q |
9 |
tttatatgtggacaagacatgcacatggcattgtgaataacacttttaattatttggatgcaccagaaattgtggctggtattgctaagtataatccttc |
108 |
Q |
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|||| ||||| |||||||| | ||||| || ||||||| | |||| |||| ||| ||||||||| | || ||| ||||||||||||||||||||||| |
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| T |
5586436 |
tttacatgtgaacaagacaagaacatgacagtgtgaatgatacttataatgattaggatgcaccttaggttatggaaggtattgctaagtataatccttc |
5586535 |
T |
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| Q |
109 |
aattttgaaaatgactcacattgaggcttttgatgctgttgtgaacgaacttggtgctcgaaatgttaaagttttgcttgataatcatgttagtgagcct |
208 |
Q |
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| T |
5586536 |
tattttgaaaacgactcatattgaggcttttgatgctgttgtgaatgaacttgatgctcagaatgtt-atgttttgcttgttaatcatgttagtgagcct |
5586634 |
T |
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| Q |
209 |
aaatggtgttgtaatgacgacgacgacaatggtttctttcatgatcaacactttgatcctcaagaatggattcatggacttaccttggc |
297 |
Q |
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| T |
5586635 |
aagttgtgttgtaatgatgataatgataat-gaatctttcatgatagacattttgatcctcaagaatggattcatggacttactttggc |
5586722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 297
Target Start/End: Original strand, 5591397 - 5591683
Alignment:
| Q |
9 |
tttatatgtggacaagacatgcacatggcattgtgaataacacttttaattatttggatgcaccagaaattgtggctggtattgctaagtataatccttc |
108 |
Q |
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| T |
5591397 |
tttacatgtgaacaagacaagaacatgacagtgtgaatgatacttataatgattaggatgcaccttaggttatggaaggtattgctaagtataatccttc |
5591496 |
T |
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| Q |
109 |
aattttgaaaatgactcacattgaggcttttgatgctgttgtgaacgaacttggtgctcgaaatgttaaagttttgcttgataatcatgttagtgagcct |
208 |
Q |
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| T |
5591497 |
tattttgaaaacgactcatattgaggcttttgatgctgttgtgaatgaacttgatgctcagaatgtt-atgttttgcttgttaatcatgttagtgagcct |
5591595 |
T |
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| Q |
209 |
aaatggtgttgtaatgacgacgacgacaatggtttctttcatgatcaacactttgatcctcaagaatggattcatggacttaccttggc |
297 |
Q |
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| T |
5591596 |
aagttgtgttgtaatgatgataatgataat-gaatctttcatgatagacattttgatcctcaagaatggattcatggacttactttggc |
5591683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 3534909 - 3534868
Alignment:
| Q |
179 |
gttttgcttgataatcatgttagtgagcctaaatggtgttgt |
220 |
Q |
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| T |
3534909 |
gttttggttgataatcatgttagtgatcctaaatggtgttgt |
3534868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 3550611 - 3550578
Alignment:
| Q |
187 |
tgataatcatgttagtgagcctaaatggtgttgt |
220 |
Q |
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| T |
3550611 |
tgataatcatgttagtgatcctaaatggtgttgt |
3550578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 3555993 - 3555960
Alignment:
| Q |
187 |
tgataatcatgttagtgagcctaaatggtgttgt |
220 |
Q |
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| T |
3555993 |
tgataatcatgttagtgatcctaaatggtgttgt |
3555960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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