View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2337_high_18 (Length: 240)
Name: NF2337_high_18
Description: NF2337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2337_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 49821384 - 49821158
Alignment:
| Q |
1 |
cccattgatgctacgtgaacccaaataaacaagtttgaatatttatcaaaccacaaatacatctctagtcaataatacatgttaatcaacaccatataaa |
100 |
Q |
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| T |
49821384 |
cccattgatgctacgtgaacccaaataaacaagtttgaatatttatcaaaccacaaatacatctctagtcaataatacatgttaatcaacaccatataaa |
49821285 |
T |
|
| Q |
101 |
tgccactttcttccagccaaaatcctcaatcaacgagctctcatctaaaacaaaatatttgcaggtaagttgttgaatc----tatcatgaaccaccaaa |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49821284 |
tgccactttcttccagccaaaatcctcaatcaacgagctctcatctaaaacaaaatatttgcaggtaagttgttgaatctatatatcatgaaccaccaaa |
49821185 |
T |
|
| Q |
197 |
ggttctccttacttttattagcgtaag |
223 |
Q |
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||||||||||||||||||||||||||| |
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| T |
49821184 |
ggttctccttacttttattagcgtaag |
49821158 |
T |
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