View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2337_high_2 (Length: 545)
Name: NF2337_high_2
Description: NF2337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2337_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 223 - 535
Target Start/End: Original strand, 1913214 - 1913526
Alignment:
| Q |
223 |
ctgacctaattaaatcagggaaatagtcccaccgaagctaacttatcagcccatgatttctgttttttcattgacaaatgttagttcattagttgttacg |
322 |
Q |
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| T |
1913214 |
ctgacctaattaaatcagggaaatagtcccaccgaagctaacttatcagcccatgatttctgttttttcattgacaaatgttagttcattagttgttacg |
1913313 |
T |
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| Q |
323 |
ttagtattttctccttcaccatagtctaaacctcggtcttcaagtcctctaactccttggacccttagtttaaatcagttgagctatccaacccaagacc |
422 |
Q |
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| T |
1913314 |
ttagtattttctccttcaccatagtctaaacctcggtcttcaagtcctctaactccttcgacccttagttcaaatcagctgagctatccaacccaagacc |
1913413 |
T |
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| Q |
423 |
tttttcgtgtacattgtgtgcaatgcatgataatgtcaattgggaaatagcaatcaatttctatcattcgtgcagtcgaacttttgattagtagaatttt |
522 |
Q |
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| T |
1913414 |
tttttcgtgtacattgtgtgcaatgcatgataatgtcaattgggaaatagcaatcaatttctatcattcgtgcagtcgaacttttgattagtagaatttt |
1913513 |
T |
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| Q |
523 |
tatgtgttctgtg |
535 |
Q |
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| T |
1913514 |
tatgtgttctgtg |
1913526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 1913009 - 1913149
Alignment:
| Q |
18 |
gaaaatctgattttcattgaaagaagcgattgctataggtcnnnnnnnnnaagcaaaatcgatgtgcaaaagcatcgctatagtgtcaacaatcaaaact |
117 |
Q |
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| T |
1913009 |
gaaaatctgattttcattgaaagaagcgattgctataggtctttttttttaagcaaaatcgatgtgcaaaagcatcgctatagtgtcaacaatcaaaact |
1913108 |
T |
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| Q |
118 |
aggttggcacactttatactgacaatcatttgcagcacacc |
158 |
Q |
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| T |
1913109 |
aggttggcacactttacactgacaatcatttgcagcacacc |
1913149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 26533878 - 26533836
Alignment:
| Q |
297 |
caaatgttagttcattagttgttacgttagtattttctccttc |
339 |
Q |
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| T |
26533878 |
caaatgttagtatattagttgttatgttagtattttctccttc |
26533836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 28202778 - 28202818
Alignment:
| Q |
71 |
caaaatcgatgtgcaaaagcatcgctatagtgtcaacaatc |
111 |
Q |
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| T |
28202778 |
caaaattgatgtgcaaaagcatccctatagtttcaacaatc |
28202818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 323
Target Start/End: Complemental strand, 25760431 - 25760395
Alignment:
| Q |
287 |
ttttcattgacaaatgttagttcattagttgttacgt |
323 |
Q |
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|||||| ||||||||||||||| |||||||||||||| |
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| T |
25760431 |
ttttcagtgacaaatgttagttaattagttgttacgt |
25760395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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